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Series GSE152314 Query DataSets for GSE152314
Status Public on Jun 20, 2020
Title Identification of GLYMA.04G093300 binding sites in soybean early maturation embryos
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.04G093300 in early maturation embryos using ChIP-seq.
Overall design Identification of GLYMA.04G093300 binding sites in soybean embryos at the early maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates, using two different antibodies. A total of 6 samples were sequenced using the Illumina HiSeq2500 platform.
Contributor(s) Pelletier J, Jo L, Uzawa R, Chen M, Golberg RB, Harada JJ
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Submission date Jun 11, 2020
Last update date Jun 21, 2020
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (6)
GSM4612382 GmEM_GLYMA.04G093300-ChIP-Ab1_br1
GSM4612383 GmEM_GLYMA.04G093300-ChIP-Ab1_br2
GSM4612384 GmEM_GLYMA.04G093300-ChIP-Ab2_br1
BioProject PRJNA638949
SRA SRP266974

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE152314_RAW.tar 3.4 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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