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| Status |
Public on Nov 02, 2020 |
| Title |
Single nuclei RNA-seq of mouse placental labyrinth development |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Single nuclei RNA-sequencing of the mouse placenta at four developmental stages (E9.5, E10.5, E12.5, E14.5).
Supplementary files include the expression matrices for the integrated datasets containing nuclei from E9.5, E10.5, E12.5, and E14.5 and the clustering annotations for either all nuclei (AllStages_AllNuclei) or subclustered trophoblast nuclei (AllStages_TrophoblastNuclei).
Processed data as R objects for both AllStages_AllNuclei and AllStages_TrophoblastNuclei are available at https://figshare.com/projects/Single_nuclei_RNA-seq_of_mouse_placental_labyrinth_development/92354
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| Overall design |
Four single nuclei sequencing collections from mouse placentas at E9.5, E10.5, E12.5, and E14.5, with an emphasis on the collection from the placental labyrinth.
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| Contributor(s) |
Marsh BP, Blelloch RH |
| Citation(s) |
33141023 |
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| Submission date |
Jun 10, 2020 |
| Last update date |
Nov 24, 2020 |
| Contact name |
Bryan P Marsh |
| E-mail(s) |
Bryan.Marsh@ucsf.edu
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| Organization name |
University of California, San Francisco
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| Street address |
35 Medical Center Way, RMB 912E, None
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA638719 |
| SRA |
SRP266862 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE152248_AllStages_AllNuclei_clusters.txt.gz |
150.8 Kb |
(ftp)(http) |
TXT |
| GSE152248_AllStages_AllNuclei_datamatrix.txt.gz |
351.9 Mb |
(ftp)(http) |
TXT |
| GSE152248_AllStages_TrophoblastNuclei_clusters.txt.gz |
102.6 Kb |
(ftp)(http) |
TXT |
| GSE152248_AllStages_TrophoblastNuclei_datamatrix.txt.gz |
225.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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