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GEO accession:
Series GSE151517
Query DataSets for GSE151517
Status
Public on Nov 12, 2020
Title
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Non-coding RNA profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33184234
Submission date
May 31, 2020
Last update date
Feb 11, 2021
Contact name
Joshua Mendell
E-mail(s)
joshua.mendell@utsouthwestern.edu
Organization name
UT Southwestern Medical Center
Department
Molecular Biology
Street address
6000 Harry Hines Blvd., NA6.200A
City
Dallas
State/province
TX
ZIP/Postal code
75390-9148
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (46)
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More...
GSM4577195
smallRNAseq_sgNT-1
GSM4577196
smallRNAseq_sgNT-2
GSM4577197
smallRNAseq_sgNT-3
GSM4577198
smallRNAseq_sgCYRANO-1
GSM4577199
smallRNAseq_sgCYRANO-2
GSM4577200
smallRNAseq_sgCYRANO-3
GSM4577201
smallRNAseq_WT-1
GSM4577202
smallRNAseq_WT-2
GSM4577203
smallRNAseq_WT-3
GSM4577204
smallRNAseq_ZSWIM8 KO-1
GSM4577205
smallRNAseq_ZSWIM8 KO-2
GSM4577206
smallRNAseq_ZSWIM8 KO-3
GSM4580140
TDMD screen_CYRANO KO-1_sorted
GSM4580141
TDMD screen_CYRANO KO-1_unsorted
GSM4580142
TDMD screen_Wild type-1_sorted
GSM4580143
TDMD screen_Wild type-1_unsorted
GSM4580144
TDMD screen_CYRANO KO-2_sorted
GSM4580145
TDMD screen_CYRANO KO-2_unsorted
GSM4580146
TDMD screen_Wild type-2_sorted
GSM4580147
TDMD screen_Wild type-2_unsorted
GSM4580148
TDMD screen_CYRANO KO-1_sorted_2nd run
GSM4580149
TDMD screen_CYRANO KO-1_unsorted_2nd run
GSM4580150
TDMD screen_Wild type-1_sorted_2nd run
GSM4580151
TDMD screen_Wild type-1_unsorted_2nd run
GSM4580152
TDMD screen_CYRANO KO-2_sorted_2nd run
GSM4580153
TDMD screen_CYRANO KO-2_unsorted_2nd run
GSM4580154
TDMD screen_Wild type-2_sorted_2nd run
GSM4580155
TDMD screen_Wild type-2_unsorted_2nd run
GSM4785414
smallRNAseq_HEK293T_nontarget control-1
GSM4785415
smallRNAseq_HEK293T_nontarget control-2
GSM4785416
smallRNAseq_HEK293T_nontarget control-3
GSM4785417
smallRNAseq_HEK293T_sgZSWIM8-1
GSM4785418
smallRNAseq_HEK293T_sgZSWIM8-2
GSM4785419
smallRNAseq_HEK293T_sgZSWIM8-3
GSM4785420
smallRNAseq_K562_wild_type-1
GSM4785421
smallRNAseq_K562_wild_type-2
GSM4785422
smallRNAseq_K562_wild_type-3
GSM4785423
smallRNAseq_K562_ZSWIM8_KO-7
GSM4785424
smallRNAseq_K562_ZSWIM8_KO-8
GSM4785425
smallRNAseq_K562_ZSWIM8_KO-10
GSM4785426
smallRNAseq_MEFs_nontarget control-1
GSM4785427
smallRNAseq_MEFs_nontarget control-2
GSM4785428
smallRNAseq_MEFs_nontarget control-3
GSM4785429
smallRNAseq_MEFs_sgZswim8-1
GSM4785430
smallRNAseq_MEFs_sgZswim8-2
GSM4785431
smallRNAseq_MEFs_sgZswim8-3
This SuperSeries is composed of the following SubSeries:
GSE151396
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming [miRNA-seq]
GSE151516
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming [TDMD]
GSE158025
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming [small RNA-seq]
Relations
BioProject
PRJNA636177
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Format
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Supplementary data files not provided
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