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Series GSE148876 Query DataSets for GSE148876
Status Public on Apr 20, 2021
Title RNA-seq and ATAC-sequencing of esophageal cells after HH pathway activation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 33882290
Submission date Apr 17, 2020
Last update date Jul 20, 2021
Contact name Alizee Vercauteren Drubbel
E-mail(s) alizeevd@gmail.com
Organization name Université Libre de Bruxelles
Lab Beck lab
Street address 808 route de Lennik
City Anderlecht
ZIP/Postal code 1070
Country Belgium
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (66)
GSM4484777 ATAC-seq_WT rep1
GSM4484778 ATAC-seq_WT rep2
GSM4484779 ATAC-seq_WT rep3
This SuperSeries is composed of the following SubSeries:
GSE148872 ATAC sequencing of esophageal cells from wild type and Krt5SmoM2 mice
GSE148874 mRNA sequencing of esophageal cells and columnar cells from different tissues
GSE148875 Single cell mRNA sequencing on esophageal cells after HH pathway activation
Relations
BioProject PRJNA626003

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148876_RAW.tar 4.3 Gb (http)(custom) TAR (of BIGWIG, H5, TDF, TXT)
SRA Run SelectorHelp
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