|
| Status |
Public on Oct 05, 2021 |
| Title |
Bulk RNA-seq of Intestine Epithelia (Jejunum, Ileum, Cecum and Colon) from Satb2-deficient and WT mice |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The goal of this study is to study the consequence of Satb2 gene loss in the colonic epithelium.
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| |
|
| Overall design |
Intestine epithelium isolated from adult mice. Genotypes include Vil-CreER;SATB2F/F (SATB2KO) and Satb2f/f (Wild Type)
Please note that the additional raw counts data (prior to normalization), which was generated from the process of generation of counts relative to genes using featureCounts with default parameters (unstranded mode), was included in the records on Nov 5, 2021.
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| |
|
| Contributor(s) |
Gu W, Huang X, Zhou Q |
| Citation(s) |
34582804 |
| |
| Submission date |
Apr 15, 2020 |
| Last update date |
Nov 05, 2021 |
| Contact name |
Wei Gu |
| E-mail(s) |
wei.gu@beigene.com
|
| Phone |
13776921246
|
| Organization name |
Beigene
|
| Department |
Beigene Institute
|
| Lab |
Gu Lab
|
| Street address |
51 Rijing Road
|
| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200135 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (28)
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| This SubSeries is part of SuperSeries: |
| GSE148695 |
SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling |
|
| Relations |
| BioProject |
PRJNA625436 |
| SRA |
SRP256439 |
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