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Series GSE148362 Query DataSets for GSE148362
Status Public on Aug 01, 2020
Title SPIN reveals genome-wide landscape of nuclear compartmentalization
Organism Homo sapiens
Experiment type Other
Summary We develop a new computational method called SPIN (Spatial Position Inference of the Nuclear genome) to identify genome-wide chromosome localization patterns relative to multiple nuclear compartments. SPIN states correlations with other features of genome structure and function, such as Hi-C subcompartments, TADs (Dixon et al., 2012; Nora et al., 2012), histone modification, and DNA replication timing.
Overall design Multi-fraction Repli-seq on K562 cell line.
Contributor(s) Sasaki T, Wang Y, Gilbert DM, Ma J
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Submission date Apr 09, 2020
Last update date Aug 03, 2020
Contact name Yuchuan Wang
Organization name Carnegie Mellon University
Street address 5000 Forbes Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM4462826 K562_G1
GSM4462827 K562_S1
GSM4462828 K562_S2
BioProject PRJNA624063
SRA SRP255865

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Supplementary file Size Download File type/resource
GSE148362_RAW.tar 185.8 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file

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