NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE147922 Query DataSets for GSE147922
Status Public on Jan 27, 2022
Title Cell Type-Specific Genomic Profiling of the Hepatic Fasting Response
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We generated time-resolved profiles of fasting-induced changes in the genomic landscapes of hepatocytes and liver macrophages using the INTACT methodology
 
Overall design We subjected female HEP-INTACT and MAC-INTACT mice to a fast starting at the onset of the mouse active phase, ZT12, and after 3, 8, 16, and 24h livers were collected for INTACT followed by ATAC-seq analyses. Ad libitum fed controls were sacrificed at each time point to account for diurnal variations in gene expression.
 
Contributor(s) Loft A, Fisker Schmidt S, Schwarzmayr T, Herzig S
Citation(s) 35120589
Submission date Apr 01, 2020
Last update date Apr 15, 2022
Contact name Anne Loft
E-mail(s) anlo@bmb.sdu.dk
Organization name University of Southern Denmark
Department Biochemistry & Molecular Biology
Street address Campusvej 55
City Odense M
ZIP/Postal code 5230
Country Denmark
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (96)
GSM4448918 MUC5830_10115_3h_fast_HEP
GSM4448919 MUC5831_9860_3h_fast_HEP
GSM4448920 MUC5832_9594_3h_Ad_HEP
This SubSeries is part of SuperSeries:
GSE147925 A Macrophage-Hepatocyte Glucocorticoid Receptor Axis Coordinates Fasting Ketogenesis
Relations
BioProject PRJNA622556
SRA SRP254922

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147922_Hep_16h_fast_TD.ucsc.bedGraph.gz 163.2 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_16h_fed_TD.ucsc.bedGraph.gz 164.0 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_24h_fast_TD.ucsc.bedGraph.gz 165.2 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_24h_fed_TD.ucsc.bedGraph.gz 165.0 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_3h_fast_TD.ucsc.bedGraph.gz 162.7 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_3h_fed_TD.ucsc.bedGraph.gz 164.7 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_8h_fast_TD.ucsc.bedGraph.gz 164.8 Mb (ftp)(http) BEDGRAPH
GSE147922_Hep_8h_fed_TD.ucsc.bedGraph.gz 164.6 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_16h_fast_TD.ucsc.bedGraph.gz 167.2 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_16h_fed_TD.ucsc.bedGraph.gz 166.4 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_24h_fast_TD.ucsc.bedGraph.gz 168.9 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_24h_fed_TD.ucsc.bedGraph.gz 166.4 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_3h_fast_TD.ucsc.bedGraph.gz 167.4 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_3h_fed_TD.ucsc.bedGraph.gz 167.4 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_8h_fast_TD.ucsc.bedGraph.gz 167.2 Mb (ftp)(http) BEDGRAPH
GSE147922_Mac_8h_fed_TD.ucsc.bedGraph.gz 165.3 Mb (ftp)(http) BEDGRAPH
GSE147922_Peaks_diff_norm_counts_HEP_INTACT_ATAC_IP.txt.gz 16.3 Mb (ftp)(http) TXT
GSE147922_Peaks_diff_norm_counts_MAC_INTACT_ATAC_IP.txt.gz 10.4 Mb (ftp)(http) TXT
GSE147922_RAW.tar 12.0 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap