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Series GSE147355 Query DataSets for GSE147355
Status Public on Mar 28, 2020
Title Single-cell analysis reveals regulation of germline stem cell fate in the human parasite Schistosoma mansoni
Organism Schistosoma mansoni
Experiment type Expression profiling by high throughput sequencing
Summary Schistosomes are parasitic flatworms that cause one of the most prevalent infectious diseases from which millions of people are currently suffering. Here, we construct a cell type atlas of juvenile schistosomes to capture germline stem cells (GSCs) in the course of de novo gonadal development.
 
Overall design We sequenced all body cells in juvenile schistosomes using Smart-seq2 protocol, resulting in a total of 10,945 single-cell transcriptomes sequenced. 7,657 of the sequenced cells passed the initial quality control and were analyzed downstream. The processed tsv files contain all cells, including cells that were filtered in the downstream analysis.
 
Contributor(s) Xue Y, Li P, Quake SR, Wang B
Citation(s) 33473133
Submission date Mar 23, 2020
Last update date Feb 02, 2021
Contact name Yuan Xue
E-mail(s) xuesoso@gmail.com
Organization name Stanford University
Street address 318 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL26379 Illumina NovaSeq 6000 (Schistosoma mansoni)
Samples (29)
GSM4426631 Plate 1009901001
GSM4426632 Plate 1009901002
GSM4426633 Plate 1009901003
Relations
BioProject PRJNA613999
SRA SRP253655

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147355_NS24_schistosome_atlas_TPM_v13.tsv.gz 121.8 Mb (ftp)(http) TSV
GSE147355_NS24_schistosome_atlas_reads_v13.tsv.gz 52.4 Mb (ftp)(http) TSV
GSE147355_SRR_and_fastqnames.txt.gz 221.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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