|
| Status |
Public on May 17, 2020 |
| Title |
Detection of DENV infected cells following natural dengue infection |
| Organisms |
Homo sapiens; Dengue virus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Viable T cells (CD3+ CD19-) and B cells (CD3- CD19+) were sorted from PBMC samples obtained from 1 individual experiencing a natural secondary DENV infection. Single cell RNA sequencing analysis was performed on 3 time points
|
| |
|
| Overall design |
Single cell RNA sequencing analysis of 3 time points from 1 subject experiencing a natural DENV infection
|
| |
|
| Contributor(s) |
Waickman A, Currier J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Mar 17, 2020 |
| Last update date |
May 17, 2020 |
| Contact name |
Adam Tully Waickman |
| Organization name |
SUNY Upstate Medical University
|
| Street address |
766 Irving Avenue
|
| City |
Syracuse |
| State/province |
New York |
| ZIP/Postal code |
13210 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL28283 |
Illumina NovaSeq 6000 (Dengue virus; Homo sapiens) |
|
| Samples (3) |
|
| This SubSeries is part of SuperSeries: |
| GSE147110 |
Analysis of cell-associated DENV RNA by oligo(dT) primed 5' capture scRNAseq |
|
| Relations |
| BioProject |
PRJNA613039 |
| SRA |
SRP253078 |
