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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 10, 2021 |
| Title |
RNA-seq analysis of subcutaneus inguinal adipose tissue from Tmem120a fat specific knockout mice (females) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Tmem120a was shown to be important for adipocytes differentiation. Here we analyze gene expression in suncutaneous adipose tissue form Tmem120a fat-specific knockout mouse on high fat vs low fat diet.
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| Overall design |
Wild type and kncokout female mice were subjected to low fat and high fat diet for 15 weeks. Tissues were collected at the age of 6 months and RNA extracted.
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| Contributor(s) |
Schirmer EC, Czapiewski R |
| Citation(s) |
35027552 |
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| Submission date |
Mar 16, 2020 |
| Last update date |
Jan 31, 2022 |
| Contact name |
Shaun Michael Webb |
| E-mail(s) |
shaun.webb@ed.ac.uk
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| Organization name |
University of Edinburgh
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| Department |
Wellcome Trust Centre for Cell Biology
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| Lab |
Bioinformatics Core Facility
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| Street address |
2.21 Swann Building, Kings Buildings
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| City |
Edinburgh |
| ZIP/Postal code |
EH9 3JR |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (20)
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| GSM4412284 |
iWAT, WT_LFD_4 |
| GSM4412285 |
iWAT, WT_LFD_5 |
| GSM4412286 |
iWAT, KO_LFD_6 |
| GSM4412287 |
iWAT, KO_LFD_7 |
| GSM4412288 |
iWAT, KO_LFD_8 |
| GSM4412289 |
iWAT, KO_LFD_9 |
| GSM4412290 |
iWAT, KO_LFD_10 |
| GSM4412291 |
iWAT, WT_HFD_11 |
| GSM4412292 |
iWAT, WT_HFD_12 |
| GSM4412293 |
iWAT, WT_HFD_13 |
| GSM4412294 |
iWAT, WT_HFD_14 |
| GSM4412295 |
iWAT, WT_HFD_15 |
| GSM4412296 |
iWAT, KO_HFD_17 |
| GSM4412297 |
iWAT, KO_HFD_18 |
| GSM4412298 |
iWAT, KO_HFD_19 |
| GSM4412299 |
iWAT, KO_HFD_20 |
| GSM4412300 |
iWAT, KO_HFD_21 |
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| Relations |
| BioProject |
PRJNA612793 |
| SRA |
SRP252965 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE147016_RAW.tar |
3.0 Gb |
(http)(custom) |
TAR (of BW) |
| GSE147016_salmon_tpm.tab.gz |
7.0 Mb |
(ftp)(http) |
TAB |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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