 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 18, 2021 |
| Title |
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
33579945 |
| |
| Submission date |
Mar 10, 2020 |
| Last update date |
Feb 14, 2021 |
| Contact name |
Maria Cristina Gambetta |
| E-mail(s) |
mariacristina.gambetta@unil.ch
|
| Organization name |
University of Lausanne
|
| Department |
Center for Integrative Genomics
|
| Street address |
Genopode Building
|
| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
| |
|
| Platforms (3) |
| GPL17275 |
Illumina HiSeq 2500 (Drosophila melanogaster) |
| GPL21306 |
Illumina HiSeq 4000 (Drosophila melanogaster) |
| GPL23702 |
HiSeq X Ten (Drosophila melanogaster) |
|
| Samples (33)
|
| GSM4405391 |
ChIP-seq_CTCF, Cp190[KO] mutant, rep1 |
| GSM4405392 |
ChIP-seq_CTCF, Cp190[KO] mutant, rep2 |
| GSM4405393 |
ChIP-seq_Cp190, wildtype, rep 1 |
| GSM4405394 |
ChIP-seq_Cp190, wildtype, rep 2 |
| GSM4405395 |
ChIP-seq_Cp190, CTCF[0] mutant, rep 1 |
| GSM4405396 |
ChIP-seq_Cp190, CTCF[0] mutant, rep 2 |
| GSM4405397 |
ChIP-seq_Cp190, Cp190[KO] mutant, rep 1 |
| GSM4405398 |
ChIP-seq_Cp190, Cp190[KO] mutant, rep 2 |
| GSM4405399 |
Hi-C_Wildtype larval CNSs, rep1 |
| GSM4405400 |
Hi-C_Wildtype larval CNSs, rep2 |
| GSM4405401 |
Hi-C_Wildtype larval CNSs, rep4 |
| GSM4405402 |
Hi-C_CTCF0 mutant larval CNSs, rep1 |
| GSM4405403 |
Hi-C_CTCF0 mutant larval CNSs, rep2 |
| GSM4405404 |
Hi-C_CTCF0 mutant larval CNSs, rep4 |
| GSM4405405 |
Hi-C_Wildtype whole-fly, rep1 |
| GSM4405406 |
Hi-C_CTCF0 mutant whole-fly, rep1 |
| GSM4405407 |
RNA-seq_Wildtype control for CTCF0, rep1 |
| GSM4405408 |
RNA-seq_Wildtype control for CTCF0, rep2 |
| GSM4405409 |
RNA-seq_Wildtype control for CTCF0, rep3 |
| GSM4405410 |
RNA-seq_CTCF0 mutant, rep1 |
| GSM4405411 |
RNA-seq_CTCF0 mutant, rep2 |
| GSM4405412 |
RNA-seq_CTCF0 mutant, rep3 |
| GSM4405413 |
RNA-seq_Wildtype control for Cp190KO, rep1 |
| GSM4405414 |
RNA-seq_Wildtype control for Cp190KO, rep2 |
| GSM4405415 |
RNA-seq_Wildtype control for Cp190KO, rep3 |
| GSM4405416 |
RNA-seq_Cp190KO, rep1 |
| GSM4405417 |
RNA-seq_Cp190KO, rep2 |
| GSM4405418 |
RNA-seq_Cp190KO, rep3 |
| GSM4966396 |
ChIP-seq_CTCF, wildtype, rep 2 |
| GSM4966397 |
ChIP-seq_CTCF, wildtype, rep 3 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE146749 |
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [ChIP-seq] |
| GSE146750 |
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [Hi-C] |
| GSE146751 |
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [RNA-seq] |
|
| Relations |
| BioProject |
PRJNA611806 |
|
|
|
|
 |
Less...
More...