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Series GSE146025 Query DataSets for GSE146025
Status Public on Jan 07, 2022
Title Mitochondrial respiration maintains autophagy to support stress resistance in quiescent cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Mitochondrial oxidative phosphorylation (OXPHOS) generates ATP and is required for pyrimidine nucleotide synthesis during proliferation. In contrast, the role of OXPHOS in post-mitotic cells, beyond its contribution to ATP production, is less understood. Here, we show that in non-proliferating cells, OXPHOS ensures protection against oxidative stress by sustaining autophagy. Autophagy is suppressed and oxidative stress resistance is compromised in OXPHOS-deficient non-proliferating cells in vitro and in TFAM knockout mice in vivo, while attenuation of autophagy in OXPHOS-functional cells phenocopies the effects of OXPHOS deficiency. Mechanistically, the regulation of the autophagy / stress response by OXPHOS does not require changes in gene expression, AMPK/mTOR1/ULK1 signaling or NADH levels. Instead, OXPHOS maintains ROS levels to prevent activation of ATG4, a ROS-activated inhibitor of autophagy. We propose that protection against oxidative stress via the ROS-ATG4 axis is a novel function of mitochondrial respiration in non-proliferating cells that may have consequences for cancer therapy and beyond.
 
Overall design Cultured Ea.hy926 cells, parental (Eahy) and OXPHOS-deficient (Rho0), were grown to confluence and 4 biological replicates were collected for bulk RNA-seq analysis.
 
Contributor(s) Novais SM, Abaffy P, Khan S, Rohlena J
Citation(s) 35258392
Submission date Feb 27, 2020
Last update date Apr 08, 2022
Contact name Jakub Rohlena
Organization name Institute of Biotechnology, CAS, v.v.i.
Lab LABORATORY OF MOLECULAR THERAPY
Street address Prumyslova 595
City Vestec by Prague
ZIP/Postal code 25250
Country Czech Republic
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM4362141 Eahy_confluent_1
GSM4362143 Eahy_confluent_2
GSM4362144 Eahy_confluent_3
Relations
BioProject PRJNA609070
SRA SRP250932

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Supplementary file Size Download File type/resource
GSE146025_Normalized_matrix_subset.csv.gz 845.8 Kb (ftp)(http) CSV
GSE146025_Not_normalized_matrix_subset.csv.gz 864.6 Kb (ftp)(http) CSV
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