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Series GSE1456 Query DataSets for GSE1456
Status Public on May 31, 2006
Title Gene expression of breast cancer tissue in a large population-based cohort of Swedish patients
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Tissue material was collected from all breast cancer patients receiving surgery at Karolinska Hospital from 1994-1996. Material was frozen immediatley on dry ice or in liquid nitrogen and stored in -70°C freezers. This series contains expression data for n=159 tumors from which RNA could be collected in sufficient amounts and quality for analysis.
Keywords: breast cancer, expression profiling, predictive gene signature, molecular classification of cancecr
 
Overall design All tumor specimens were assessed on U133 A and B arrays.
Web link http://www.meb.ki.se/~yudpaw/
 
Contributor(s) Pawitan Y, Bjohle J, Amler L, Borg A, Egyhazi S, Hall P, Han X, Holmberg L, Huang F, Klaar S, Liu ET, Miller LD, Nordgren H, Ploner A, Sandelin K, Shaw PM, Smeds J, Skoog L, Wedren S, Bergh J
Citation(s) 16280042
Submission date Jun 04, 2004
Last update date Aug 10, 2018
Contact name Alexander Ploner
E-mail Alexander.Ploner@meb.ki.se
Phone ++46-8-524-82329
Fax ++46-8-31 11 01
Organization name Karolinska Institutet
Department Medical Epidemiology and Biostatistics
Street address
City Stockholm
ZIP/Postal code SE-171 77
Country Sweden
 
Platforms (2)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
GPL97 [HG-U133B] Affymetrix Human Genome U133B Array
Samples (318)
GSM107072 X027JO (HG-U133A)
GSM107073 X350JO (HG-U133A)
GSM107074 X028JA (HG-U133A)
Relations
BioProject PRJNA90007

Clinical Data, table version 2, updated on June 12, 2009 header descriptions
ID_REF sample reference
RELAPSE breast cancer relapse (1 = relapse, 0 = no relapse or censored)
SURV_RELAPSE time until relapse or censoring (in years)
DEATH death from any reason (1 = dead, 0 = alive or censored)
DEATH_BC death due to breast cancer (1 = dead from breast cancer, 0 = alive or censored)
SURV_DEATH time until death or censoring (in years)
SUBTYPE tumor subclasses as decribed in PMID 11553815 (No Subtype = sample could not be classified)
ELSTON Elston tumor grade (1-3)

Data table
ID_REF RELAPSE SURV_RELAPSE DEATH DEATH_BC SURV_DEATH SUBTYPE ELSTON
X027JO 1 3.82 1 1 4.14 No Subtype 2
X350JO 0 8.15 0 0 8.15 Luminal B 3
X028JA 0 2.22 1 0 2.22 Luminal A 1
X126AS 0 8.23 0 0 8.23 No Subtype 2
X005JO 0 5.55 1 0 5.55 Luminal A NA
X045OL 0 8.3 0 0 8.3 Luminal B 3
X041LA 0 4.42 1 0 4.42 Luminal A 2
X229LA 0 8.07 0 0 8.07 No Subtype 1
X347JA 0 6.38 0 0 6.38 Basal 3
X122FO 0 8.13 0 0 8.13 ERBB2 3
X054BO 1 4.08 1 1 5.51 Basal NA
X204FA 0 8.11 0 0 8.11 No Subtype 2
X356AL 1 3.47 1 1 5.47 Luminal B 3
X089HO 1 0.56 0 0 6.82 Luminal B 3
X215HE 1 5.53 1 1 6.25 Normal Like 2
X223LI 0 7.71 0 0 7.71 No Subtype 2
X055SV 1 4.44 1 1 6.22 Luminal A 2
X380MO 1 1.39 1 1 3.06 Basal 3
X111MA 0 5.87 1 0 5.87 Basal 3
X264LA 0 7.86 0 0 7.86 Luminal A 2

Total number of rows: 159

Table truncated, full table size 5 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE1456_RAW.tar 1.0 Gb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file

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