GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE14403 Query DataSets for GSE14403
Status Public on Jul 16, 2009
Title Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Platform organism Oryza sativa
Sample organism Oryza sativa Indica Group
Experiment type Expression profiling by array
Summary Analysis of root gene expression of salt-tolerant genotypes FL478, Pokkali and IR63731, and salt-sensitive genotype IR29 under control and salinity-stressed conditions during vegetative growth. Results provide insight into the genetic basis of salt tolerance in indica rice.

Keywords: stress response
Overall design Seedlings were cultured in sand and irrigated with a nutrient solution for 22 d (salt-treated) and 30 d (control) after germination, respectively. Salinity treatment was applied by adding NaCl and CaCl2 (5:1 molar concentration) in two steps over a period of 3 days (final electrical conductivity: 7.4 dS m-1) to prevent osmotic shock. All plants were harvested on day 30.
Contributor(s) Cotsaftis O, Plett D, Johnson AA, Close TJ, Tester M, Baumann U, Walia H, Wilson C
Citation(s) 20924028
Submission date Jan 13, 2009
Last update date Dec 27, 2017
Contact name Ute Baumann
Phone ++61 8 83037388
Organization name University of Adelaide
Department Australian Centre for Plant Functional Genomics
Street address Hartley Grove
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (23)
GSM359902 FL478 root, control, biological replicate 1
GSM359903 FL478 root, control, biological replicate 2
GSM359904 FL478 root, control, biological replicate 3
BioProject PRJNA111791

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14403_RAW.tar 105.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap