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Series GSE143347 Query DataSets for GSE143347
Status Public on Mar 30, 2020
Title Fragile X urine microRNA profiling
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary MicroRNA (miRNA) biomarkers for fragile X syndrome were searched by urine microRNA (miRNA) profiling using deep sequencing. The urine miRNA profile of twin boys who shared the same environment but one had a FXS full mutation and the other carried a premutation allele was compared based on the similar sequence reads. The urine of twin boys showed 28 differentiatially regulated miRNAs when 219 reliable identified miRNAs were compared.
 
Overall design urine microRNA profiles of compared
 
Contributor(s) Castrén ML, Laiho A
Citation(s) 31991700
Submission date Jan 09, 2020
Last update date Mar 30, 2020
Contact name Maija L Castrén
E-mail(s) maija.castren@helsinki.fi
Organization name University of Helsinki
Department Faculty of Medicine/Physiology
Street address P.O.BOX 63
City Helsinki
State/province Helsinki
ZIP/Postal code 00014
Country Finland
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM4257465 1_U_CNTRL_miRNA-seq
GSM4257466 2_U_FXS_miRNA-seq
GSM4257467 3_U_PreMt_miRNA-seq
Relations
BioProject PRJNA600202
SRA SRP240893

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143347_normalizedData.xlsx 19.0 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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