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Series GSE143301 Query DataSets for GSE143301
Status Public on Jun 30, 2020
Title Ribosome profiling under ABCE1 depletion to study aberrant translation termination
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the effect of siRNA-mediated ABCE1 KD in HeLa cells, using a modified ribosome profiling protocol adapted from Ingolia et al., 2011 in order to specifically investigate ABCE1 role on translation termination
Overall design Control and ABCE1 KD conditions, three replicates for condition. totalRNA samples in parallel for input control.
Contributor(s) Annibaldis G, Dreos R, Muhlemann O
Citation(s) 32807779
Submission date Jan 08, 2020
Last update date Oct 15, 2020
Contact name Rene Dreos
Phone 0044 (0)1603 450793
Organization name UNIL
Department CIG
Lab Gatfield Lab
Street address Ecublens
City Lausanne
State/province VD
ZIP/Postal code 1015
Country Switzerland
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (21)
GSM4256659 SK1_M (L6)
GSM4256660 SK2_M (L6)
GSM4256661 SK3_M (L6)
BioProject PRJNA599943
SRA SRP240357

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143301_RAW.tar 16.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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