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Series GSE142673 Query DataSets for GSE142673
Status Public on Dec 28, 2019
Title Transcriptional profiles of wild-type and pheta1/2 mutant zebrafish larvae
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of the experiment was to identify the effects of pheta1 and pheta2 on the expression of genes associated with chondrogenesis and osteogenesis
 
Overall design Total RNA from 5 days-post fertizliation larvae. Each sample is from a pool of 10 larvae. 3 replicates each for wild-type, pheta1 mutant, and pheta1/2 double mutant.
 
Contributor(s) Pan YA
Citation(s) 32152089
NIH grant(s)
Grant ID Grant title Affiliation Name
R21 GM119016 USING CELL, FLY, AND ZEBRAFISH MODELS TO UNDERSTAND FAM109A GENE FUNCTION IN UNDIAGNOSED DISEASE Augusta University Research Institute, Inc. YUCHIN Albert Pan
R01 GM086524 PATHOGENIC MECHANISMS OF LYSOSOMAL DISEASE GREENWOOD GENETIC CENTER Richard Steet
Submission date Dec 27, 2019
Last update date Mar 29, 2020
Contact name Yuchin Albert Pan
E-mail(s) yapan@vtc.vt.edu
Organization name Virginia Tech
Street address 2 Riverside Circle
City Roanoke
State/province VA
ZIP/Postal code 24018
Country USA
 
Platforms (1)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (9)
GSM4237576 GRL18068-WT1
GSM4237577 GRL18069-WT2
GSM4237578 GRL18070-WT3
Relations
BioProject PRJNA597907
SRA SRP238919

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142673_Pheta_RNAseq_counts.xlsx 5.8 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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