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Series GSE142284 Query DataSets for GSE142284
Status Public on Jun 02, 2020
Title Genome-wide mapping of AP sites, binding of repair proteins and G4 structure formation
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We demonstrate that there is a genome-wide correlation between endogenous AP site damages, binding of repair proteins APE1, AcAPE1 and AcOGG1 and G4 structure formation.
 
Overall design Examination of endogenous AP site formation, binding of repair proteins APE1, AcAPE1 and AcOGG1 and formation of G4 structure.
 
Contributor(s) Kishor B, Shrabasti R
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Submission date Dec 18, 2019
Last update date Jun 05, 2020
Contact name Shrabasti Roychoudhury
E-mail(s) s.roychoudhury@unmc.edu
Organization name University of Nebraska Medical Center
Street address S 42nd &, Emile St
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (21)
GSM4224411 AP seq_A549 cells_rep1
GSM4224412 AP seq_A549 cells_rep2
GSM4224413 APE1 seq_A549 cells_rep1
Relations
BioProject PRJNA596467
SRA SRP238093

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142284_RAW.tar 10.9 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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