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Series GSE142160 Query DataSets for GSE142160
Status Public on Jan 03, 2020
Title DNase-seq profiling of Saos-2 and U2OS cell lines
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed DNase-seq on two osteosarcoma cell lines, Saos-2 and U2OS. This was done to identify regulatory regions within the genomes of these cells. We performed hotspot calling on these data using Hotspot2 (https://github.com/Altius/hotspot2) to identify 51,556 DNaseI hypersensitive sites within Saos-2 cells and 63,388 within U2OS cells.
 
Overall design A single replicate of each of Saos-2 and U2OS cell lines was profiled using DNase-seq
 
Contributor(s) Hogan MS, Vulpescu NA, Maurano MT
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 17, 2019
Last update date Nov 25, 2020
Contact name Matthew T Maurano
E-mail(s) maurano@nyu.edu
Organization name NYU School of Medicine
Department Institute for Systems Genetics
Lab Maurano
Street address 435 East 30th Street
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (2)
GSM4221654 Saos2_DNase-seq
GSM4221655 U2OS_DNase-seq
Relations
BioProject PRJNA596091
SRA SRP237908

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Supplementary file Size Download File type/resource
GSE142160_RAW.tar 280.3 Mb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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