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| Status |
Public on Dec 31, 2020 |
| Title |
The infection cushion: a fungal weapon for plant-biomass destruction |
| Organism |
Botrytis cinerea |
| Experiment type |
Expression profiling by array
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| Summary |
Full transcriptomes of the Botrytis cinerea wild-type strain B0510, cultured in liquid medium or on cellophane sheets placed on PDB 1/4-agar plates, were compared to identify genes differentially expressed when infection cushions are formed from vegetative mycelium.
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| Overall design |
Botrytis cinerea conidia were spread onto cellophane sheets placed on PDB 1/4-agar plates and harvested after 44h of culture when infection cushions (IC) represented about 40% of the surface of the plates. Control samples corresponding to mycelium grown in liquid PDB 1/4 were harvested after 44h of culture. 4 and 3 replicates were performed for IC and mycelium, respectively. The 7 total-RNA samples were used for hybridization on Nimblegen 4plex gene expression arrays (20,885 gene models from Botrytis cinerea with three 60-mer probes per gene)
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| Contributor(s) |
Choquer M, Rascle C, Gonçalves I, Bruel C, Poussereau N, deVallée A |
| Citation missing |
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| |
| Submission date |
Dec 11, 2019 |
| Last update date |
Jan 02, 2021 |
| Contact name |
MATHIAS CHOQUER |
| E-mail(s) |
mathias.choquer@univ-lyon1.fr
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| Organization name |
UNIVERSITE LYON1
|
| Lab |
Microbiologie, Adaptation et Pathogénie, UMR 5240
|
| Street address |
10, rue Raphaël Dubois
|
| City |
VILLEURBANNE |
| ZIP/Postal code |
69100 |
| Country |
France |
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| Platforms (1) |
| GPL27896 |
NimbleGen_Botrytis_4plex [091204_Botrytis_v2_expr_X4] |
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| Samples (7)
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| Relations |
| BioProject |
PRJNA594919 |
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