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Series GSE141676 Query DataSets for GSE141676
Status Public on Dec 10, 2019
Title Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms
Organisms Schizosaccharomyces pombe; Saccharomyces cerevisiae; Neurospora crassa
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the development of a versatile strategy to map nucleosomes in multiple model organisms
 
Overall design Nucleosome positoining data (MNase-seq) from S. cerevisiae (exponentially-growing, quiescent, solid patches), N. crassa, and S. pombe
 
Contributor(s) McKnight J
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Submission date Dec 09, 2019
Last update date Dec 12, 2019
Contact name Jeffrey N McKnight
E-mail(s) jmcknig2@uoregon.edu
Organization name University of Oregon
Department Institute of Molecular Biology
Lab McKnight Lab
Street address 1229 University of Oregon, 1318 Franklin Blvd, Rm 273 Onyx Bridge
City Eugene
State/province OR
ZIP/Postal code 97408
Country USA
 
Platforms (3)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
GPL20584 Illumina NextSeq 500 (Schizosaccharomyces pombe)
GPL20660 Illumina NextSeq 500 (Neurospora crassa)
Samples (13)
GSM4210970 WT_cerevisiae_standard-1
GSM4210971 WT_cerevisiae_standard-2
GSM4210972 isw2_cerevisiae_standard-1
Relations
BioProject PRJNA594357
SRA SRP235270

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141676_RAW.tar 583.4 Mb (http)(custom) TAR (of SGR)
GSE141676_neurospora_crassa_or74a_12_genome_FIXED.fasta.gz 11.3 Mb (ftp)(http) FASTA
GSE141676_neurospora_crassa_or74a_12_transcripts_FIXED.gtf.gz 755.6 Kb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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