|
| Status |
Public on Dec 17, 2019 |
| Title |
Identification of GLYMA.13G317000 binding sites in soybean early maturation embryos. |
| Organism |
Glycine max |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.13G317000 in early maturation embryos using ChIP-seq.
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| |
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| Overall design |
Identification of GLYMA.13G317000 binding sites in soybean embryos at the early maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 4 samples were sequenced using the Illumina HiSeq3000 platform.
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| |
|
| Contributor(s) |
Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Nov 19, 2019 |
| Last update date |
Dec 21, 2019 |
| Contact name |
John Harada |
| E-mail(s) |
jjharada@ucdavis.edu
|
| Organization name |
University of California
|
| Department |
Plant Biology
|
| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL23486 |
Illumina HiSeq 3000 (Glycine max) |
|
| Samples (4)
|
| GSM4182147 |
GmEM-Input_br2 (GLYMA.13G317000 control) |
|
| Relations |
| BioProject |
PRJNA590535 |
| SRA |
SRP230647 |
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