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Series GSE140699 Query DataSets for GSE140699
Status Public on Dec 17, 2019
Title Identification of GLYMA.06G314400 binding sites in soybean early maturation embryos.
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.06G314400 in early maturation embryos using ChIP-seq.
Overall design Identification of GLYMA.06G314400 binding sites in soybean embryos at the early maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
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Submission date Nov 19, 2019
Last update date Dec 21, 2019
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (4)
GSM4182136 GmEM_GLYMA.06G314400-B-ChIP_br1
GSM4182137 GmEM_GLYMA.06G314400-B-ChIP_br2
GSM4182138 GmEM-Input_br1 (GLYMA.06G314400 control)
BioProject PRJNA590537
SRA SRP230645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140699_RAW.tar 2.3 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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