|
| Status |
Public on Jul 09, 2020 |
| Title |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Non-coding RNA profiling by array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
32710630 |
| |
| Submission date |
Nov 18, 2019 |
| Last update date |
Sep 15, 2020 |
| Contact name |
Kathleen McCann |
| E-mail(s) |
kathleen.mccann2@nih.gov
|
| Organization name |
National Institute of Environmental Health Sciences
|
| Street address |
111 TW Alexander Dr
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27709 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL27649 |
Nanostring Custom Codeset. Reporter Libraray file id: McCann_SnoRNA_2.rlf |
|
| Samples (40)
|
| GSM4146706 |
mESCs untreated T=0 rep1 (small RNA-seq) |
| GSM4146707 |
mESCs untreated T=0 rep2 (small RNA-seq) |
| GSM4146708 |
mESCs untreated T=0 rep3 (small RNA-seq) |
| GSM4146709 |
mESCs +RA T=6 rep1 (small RNA-seq) |
| GSM4146710 |
mESCs +RA T=6 rep2 (small RNA-seq) |
| GSM4146711 |
mESCs +RA T=6 rep3 (small RNA-seq) |
| GSM4175856 |
C2C12 cells, Nano104_C2C12 1 |
| GSM4175857 |
C2C12 cells, Nano104_C2C12 2 |
| GSM4175858 |
C2C12 cells, Nano104_C2C12 3 |
| GSM4175859 |
C2C12 cells, Nano104_Myotubes 1 |
| GSM4175860 |
C2C12 cells, Nano104_Myotubes 2 |
| GSM4175861 |
C2C12 cells, Nano104_Myotubes 3 |
| GSM4175912 |
SSC1 |
| GSM4175913 |
SSC2 |
| GSM4175914 |
SSC3 |
| GSM4175915 |
SSC4 |
| GSM4175916 |
NIH3T3 1 |
| GSM4175917 |
NIH3T3 2 |
| GSM4175918 |
NIH3T3 3 |
| GSM4175919 |
RAW 1 |
| GSM4175920 |
RAW 2 |
| GSM4175921 |
RAW 3 |
| GSM4175922 |
ESCs, RA1 |
| GSM4175923 |
ESCs, RA2 |
| GSM4175924 |
ESCs, RA3 |
| GSM4175925 |
ESC1 |
| GSM4175926 |
ESC2 |
| GSM4175927 |
ESC3 |
| GSM4175928 |
ESCs, aMHC1 |
| GSM4175929 |
ESCs, aMHC2 |
| GSM4175930 |
ESCs, aMHC3 |
| GSM4175931 |
Cardiomyo1 |
| GSM4175932 |
Cardiomyo2 |
| GSM4175933 |
Cardiomyo3 |
| GSM4489536 |
C2C12 Undifferentiated rep1 [RNA-seq] |
| GSM4489539 |
C2C12 Undifferentiated rep2 [RNA-seq] |
| GSM4489541 |
C2C12 Undifferentiated rep3 [RNA-seq] |
| GSM4489544 |
C2C12 Myotubes rep1 [RNA-seq] |
| GSM4489545 |
C2C12 Myotubes rep2 [RNA-seq] |
| GSM4489546 |
C2C12 Myotubes rep3 [RNA-seq] |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE139812 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [RNA-seq and ncRNA-seq] |
| GSE140618 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [Nano104] |
| GSE140622 |
Regulated snoRNA expression during differentiation corresponds with a change in ribosomal RNA pseudouridylation and altered pre-ribosomal RNA processing [Nano77] |
|
| Relations |
| BioProject |
PRJNA590255 |
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