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GEO accession:
Series GSE140611
Query DataSets for GSE140611
Status
Public on Apr 30, 2020
Title
Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32760002
Submission date
Nov 18, 2019
Last update date
Aug 07, 2020
Contact name
Hoang Nguyen
E-mail(s)
hoang.buinguyen@pennmedicine.upenn.edu
Phone
(215) 898-0198
Organization name
University of Pennsylvania Perelman School of Medicine
Street address
3400 Civic Center Boulevard
City
Philadelphia
State/province
PA
ZIP/Postal code
19104-5160
Country
USA
Platforms (4)
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More...
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (273)
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More...
GSM4174615
Control_1_GRO_seq
GSM4174616
Control_2_GRO_seq
GSM4174617
Control_3_GRO_seq
GSM4174618
Control_LPS_1_GRO_seq
GSM4174619
Control_LPS_2_GRO_seq
GSM4174620
Control_LPS_3_GRO_seq
GSM4174621
KO_1_GRO_seq
GSM4174622
KO_2_GRO_seq
GSM4174623
KO_3_GRO_seq
GSM4174624
KO_LPS_1_GRO_seq
GSM4174625
KO_LPS_2_GRO_seq
GSM4174626
KO_LPS_3_GRO_seq
GSM4174716
HDAC3_KO_1
GSM4174717
HDAC3_KO_2
GSM4174718
HDAC3_KO_3
GSM4174719
HDAC3_KO_LPS_1
GSM4174720
HDAC3_KO_LPS_2
GSM4174721
HDAC3_KO_LPS_3
GSM4174722
HDAC3_WT_1
GSM4174723
HDAC3_WT_2
GSM4174724
HDAC3_WT_3
GSM4174725
HDAC3_WT_LPS_1
GSM4174726
HDAC3_WT_LPS_2
GSM4174727
HDAC3_WT_LPS_3
GSM4174728
HDA3_Y298F_1
GSM4174729
HDA3_Y298F_2
GSM4174730
HDA3_Y298F_3
GSM4174731
HDAC3_Y298F_LPS_1
GSM4174732
HDAC3_Y298F_LPS_2
GSM4174733
HDAC3_Y298F_LPS_3
GSM4174734
H3K27_KO1
GSM4174735
H3K27_KO2
GSM4174736
H3K27_KO3
GSM4174737
H3K27_KO_lps_1
GSM4174738
H3K27_KO_lps_2
GSM4174739
H3K27_KO_lps_3
GSM4174740
H3K27_wt1
GSM4174741
H3K27_wt2
GSM4174742
H3K27_wt3
GSM4174743
H3K27_wt_lps_1
GSM4174744
H3K27_wt_lps_2
GSM4174745
H3K27_wt_lps_3
GSM4174746
ATF2_1
GSM4174747
ATF2_2
GSM4174748
ATF2_3
GSM4174749
ATF2_LPS_1
GSM4174750
ATF2_LPS_2
GSM4174751
ATF2_LPS_3
GSM4174752
ATF3_wt1
GSM4174753
ATF3_wt2
GSM4174754
ATF3_wt3
GSM4174755
ATF3_wt_lps_1
GSM4174756
ATF3_wt_lps_2
GSM4174757
ATF3_wt_lps_3
GSM4174758
NCoR1_1
GSM4174759
NCoR1_2
GSM4174760
NCoR1_3
GSM4174761
NCOR1_LPS1
GSM4174762
NCOR1_LPS2
GSM4174763
NCOR1_LPS3
GSM4174764
NCOR1_LPS4
GSM4174765
NCoR2_Ctrl_1
GSM4174766
NCoR2_Ctrl_2
GSM4174767
NCoR2_Ctrl_3
GSM4174768
NCoR2_LPS1
GSM4174769
NCoR2_LPS2
GSM4174770
NCoR2_LPS3
GSM4174771
p65_KO1
GSM4174772
p65_KO2
GSM4174773
p65_KO3
GSM4174774
KO_P65_ChIP_LPS_1
GSM4174775
KO_P65_ChIP_LPS_2
GSM4174776
KO_P65_ChIP_LPS_3
GSM4174777
p65_wt1
GSM4174778
p65_wt2
GSM4174779
p65_wt3
GSM4174780
WT_P65_ChIP_LPS_1
GSM4174781
WT_P65_ChIP_LPS_2
GSM4174782
WT_P65_ChIP_LPS_3
GSM4174783
0nM_1_SAHA_LPS_HDAC3_ChIP_seq
GSM4174784
0nM_1_SAHA_HDAC3_ChIP_seq
GSM4174785
0nM_2_SAHA_LPS_HDAC3_ChIP_seq
GSM4174786
0nM_2_SAHA_HDAC3_ChIP_seq
GSM4174787
0nM_3_SAHA_LPS_HDAC3_ChIP_seq
GSM4174788
0nM_3_SAHA_HDAC3_ChIP_seq
GSM4174789
100nM_1_SAHA_LPS_HDAC3_ChIP_seq
GSM4174790
100nM_1_SAHA_HDAC3_ChIP_seq
GSM4174791
100nM_2_SAHA_LPS_HDAC3_ChIP_seq
GSM4174792
100nM_2_SAHA_HDAC3_ChIP_seq
GSM4174793
100nM_3_SAHA_LPS_HDAC3_ChIP_seq
GSM4174794
100nM_3_SAHA_HDAC3_ChIP_seq
GSM4174795
25nM_1_SAHA_LPS_HDAC3_ChIP_seq
GSM4174796
25nM_1_SAHA_HDAC3_ChIP_seq
GSM4174797
25nM_2_SAHA_LPS_HDAC3_ChIP_seq
GSM4174798
25nM_2_SAHA_HDAC3_ChIP_seq
GSM4174799
25nM_3_SAHA_LPS_HDAC3_ChIP_seq
GSM4174800
25nM_3_SAHA_HDAC3_ChIP_seq
GSM4174801
400nM_1_SAHA_LPS_HDAC3_ChIP_seq
GSM4174802
400nM_1_SAHA_HDAC3_ChIP_seq
GSM4174803
400nM_2_SAHA_LPS_HDAC3_ChIP_seq
GSM4174804
400nM_2_SAHA_HDAC3_ChIP_seq
GSM4174805
400nM_3_SAHA_LPS_HDAC3_ChIP_seq
GSM4174806
400nM_3_SAHA_HDAC3_ChIP_seq
GSM4174807
siATF2_1_LPS_HDAC3_ChIP_seq
GSM4174808
siATF2_1_NA_HDAC3_ChIP_seq
GSM4174809
siATF2_2_LPS_HDAC3_ChIP_seq
GSM4174810
siATF2_2_NA_HDAC3_ChIP_seq
GSM4174811
siATF3_1_LPS_HDAC3_ChIP_seq
GSM4174812
siATF3_1_NA_HDAC3_ChIP_seq
GSM4174813
siATF3_2_LPS_HDAC3_ChIP_seq
GSM4174814
siATF3_2_NA_HDAC3_ChIP_seq
GSM4174815
siC_1_LPS_HDAC3_ChIP_seq
GSM4174816
siC_1_NA_HDAC3_ChIP_seq
GSM4174817
siC_2_LPS_HDAC3_ChIP_seq
GSM4174818
siC_2_NA_HDAC3_ChIP_seq
GSM4174819
sip65_1_LPS_HDAC3_ChIP_seq
GSM4174820
sip65_1_NA_HDAC3_ChIP_seq
GSM4174821
sip65_2_LPS_HDAC3_ChIP_seq
GSM4174822
sip65_2_NA_HDAC3_ChIP_seq
GSM4174823
CHIP_seq_ATF2_input_LPS
GSM4174824
CHIP_seq_ATF2_input_veh
GSM4174825
CHIP_seq_ATF3_input_LPS
GSM4174826
CHIP_seq_ATF3_input_veh
GSM4174827
CHIP_seq_H3K27Ac_input_LPS
GSM4174828
CHIP_seq_H3K27Ac_input_veh
GSM4174829
CHIP_seq_HDAC3_input_LPS
GSM4174830
CHIP_seq_HDAC3_input_veh
GSM4174831
CHIP_seq_NCoR1_input_veh
GSM4174832
CHIP_seq_NCoR2_input_LPS
GSM4174833
CHIP_seq_NCoR2_input_veh
GSM4174834
CHIP_seq_p65_input_LPS
GSM4174835
CHIP_seq_p65_input_veh
GSM4174836
ChIP_seq_NCoR1_input_LPS
GSM4174837
invivo_LPS1_HDAC3_ChIP_seq
GSM4174838
invivo_LPS2_HDAC3_ChIP_seq
GSM4174839
invivo_LPS3_HDAC3_ChIP_seq
GSM4174840
invivo_vehicle1_HDAC3_ChIP_seq
GSM4174841
invivo_vehicle2_HDAC3_ChIP_seq
GSM4174842
invivo_vehicle3_HDAC3_ChIP_seq
GSM4175208
Control_veh_1 [invitro_LPS]
GSM4175209
Control_veh_2 [invitro_LPS]
GSM4175210
Control_veh_3 [invitro_LPS]
GSM4175211
Control_veh_4 [invitro_LPS]
GSM4175212
Control_LPS_1 [invitro_LPS]
GSM4175213
Control_LPS_2 [invitro_LPS]
GSM4175214
Control_LPS_3 [invitro_LPS]
GSM4175215
Control_LPS_4 [invitro_LPS]
GSM4175216
MHD3KO_veh_1 [invitro_LPS]
GSM4175217
MHD3KO_veh_2 [invitro_LPS]
GSM4175218
MHD3KO_veh_3 [invitro_LPS]
GSM4175219
MHD3KO_veh_4 [invitro_LPS]
GSM4175220
MHD3KO_LPS_1 [invitro_LPS]
GSM4175221
MHD3KO_LPS_2 [invitro_LPS]
GSM4175222
MHD3KO_LPS_3 [invitro_LPS]
GSM4175223
MHD3KO_LPS_4 [invitro_LPS]
GSM4175224
Y298F_veh_1 [invitro_LPS]
GSM4175225
Y298F_veh_2 [invitro_LPS]
GSM4175226
Y298F_veh_3 [invitro_LPS]
GSM4175227
Y298F_veh_4 [invitro_LPS]
GSM4175228
Y298F_LPS_1 [invitro_LPS]
GSM4175229
Y298F_LPS_2 [invitro_LPS]
GSM4175230
Y298F_LPS_3 [invitro_LPS]
GSM4175231
Y298F_LPS_4 [invitro_LPS]
GSM4175232
WTres_veh_1 [invitro_LPS]
GSM4175233
WTres_veh_2 [invitro_LPS]
GSM4175234
WTres_veh_3 [invitro_LPS]
GSM4175235
WTres_veh_4 [invitro_LPS]
GSM4175236
WTres_LPS_1 [invitro_LPS]
GSM4175237
WTres_LPS_2 [invitro_LPS]
GSM4175238
WTres_LPS_3 [invitro_LPS]
GSM4175239
WTres_LPS_4 [invitro_LPS]
GSM4175240
WT_1_M2 [invitro_IL4]
GSM4175241
WT_2_M2 [invitro_IL4]
GSM4175242
WT_3_M2 [invitro_IL4]
GSM4175243
WT_4_M2 [invitro_IL4]
GSM4175244
WT_IL4_1_M2 [invitro_IL4]
GSM4175245
WT_IL4_2_M2 [invitro_IL4]
GSM4175246
WT_IL4_3_M2 [invitro_IL4]
GSM4175247
WT_IL4_4_M2 [invitro_IL4]
GSM4175248
KO_1_M2 [invitro_IL4]
GSM4175249
KO_2_M2 [invitro_IL4]
GSM4175250
KO_3_M2 [invitro_IL4]
GSM4175251
KO_4_M2 [invitro_IL4]
GSM4175252
KO_IL4_1_M2 [invitro_IL4]
GSM4175253
KO_IL4_2_M2 [invitro_IL4]
GSM4175254
KO_IL4_3_M2 [invitro_IL4]
GSM4175255
KO_IL4_4_M2 [invitro_IL4]
GSM4175256
Y298F_1_M2 [invitro_IL4]
GSM4175257
Y298F_2_M2 [invitro_IL4]
GSM4175258
Y298F_3_M2 [invitro_IL4]
GSM4175259
Y298F_4_M2 [invitro_IL4]
GSM4175260
Y298F_IL4_1_M2 [invitro_IL4]
GSM4175261
Y298F_IL4_2_M2 [invitro_IL4]
GSM4175262
Y298F_IL4_3_M2 [invitro_IL4]
GSM4175263
Y298F_IL4_4_M2 [invitro_IL4]
GSM4175264
KO_WT_1_M2 [invitro_IL4]
GSM4175265
KO_WT_2_M2 [invitro_IL4]
GSM4175266
KO_WT_3_M2 [invitro_IL4]
GSM4175267
KO_WT_4_M2 [invitro_IL4]
GSM4175268
KO_WT_IL4_1_M2 [invitro_IL4]
GSM4175269
KO_WT_IL4_2_M2 [invitro_IL4]
GSM4175270
KO_WT_IL4_3_M2 [invitro_IL4]
GSM4175271
KO_WT_IL4_4_M2 [invitro_IL4]
GSM4175272
siC_1_veh [siRNA]
GSM4175273
siC_2_veh [siRNA]
GSM4175274
siC_3_veh [siRNA]
GSM4175275
siC_1_LPS [siRNA]
GSM4175276
siC_2_LPS [siRNA]
GSM4175277
siC_3_LPS [siRNA]
GSM4175278
siATF2_1_veh [siRNA]
GSM4175279
siATF2_2_veh [siRNA]
GSM4175280
siATF2_3_veh [siRNA]
GSM4175281
siATF2_1_LPS [siRNA]
GSM4175282
siATF2_2_LPS [siRNA]
GSM4175283
siATF2_3_LPS [siRNA]
GSM4175284
siATF3_1_veh [siRNA]
GSM4175285
siATF3_2_veh [siRNA]
GSM4175286
siATF3_3_veh [siRNA]
GSM4175287
siATF3_1_LPS [siRNA]
GSM4175288
siATF3_2_LPS [siRNA]
GSM4175289
siATF3_3_LPS [siRNA]
GSM4175290
sip65_1_veh [siRNA]
GSM4175291
sip65_2_veh [siRNA]
GSM4175292
sip65_3_veh [siRNA]
GSM4175293
sip65_1_LPS [siRNA]
GSM4175294
sip65_2_LPS [siRNA]
GSM4175295
sip65_3_LPS [siRNA]
GSM4175296
a_0nM_1_SAHA [SAHA]
GSM4175297
a_0nM_2_SAHA [SAHA]
GSM4175298
a_0nM_3_SAHA [SAHA]
GSM4175299
a_0nM_1_SAHA_LPS [SAHA]
GSM4175300
a_0nM_2_SAHA_LPS [SAHA]
GSM4175301
a_0nM_3_SAHA_LPS [SAHA]
GSM4175302
a_25nM_1_SAHA [SAHA]
GSM4175303
a_25nM_2_SAHA [SAHA]
GSM4175304
a_25nM_3_SAHA [SAHA]
GSM4175305
a_25nM_1_SAHA_LPS [SAHA]
GSM4175306
a_25nM_2_SAHA_LPS [SAHA]
GSM4175307
a_25nM_3_SAHA_LPS [SAHA]
GSM4175308
a_100nM_1_SAHA [SAHA]
GSM4175309
a_100nM_2_SAHA [SAHA]
GSM4175310
a_100nM_3_SAHA [SAHA]
GSM4175311
a_100nM_1_SAHA_LPS [SAHA]
GSM4175312
a_100nM_2_SAHA_LPS [SAHA]
GSM4175313
a_100nM_3_SAHA_LPS [SAHA]
GSM4175314
a_400nM_1_SAHA [SAHA]
GSM4175315
a_400nM_2_SAHA [SAHA]
GSM4175316
a_400nM_3_SAHA [SAHA]
GSM4175317
a_400nM_1_SAHA_LPS [SAHA]
GSM4175318
a_400nM_2_SAHA_LPS [SAHA]
GSM4175319
a_400nM_3_SAHA_LPS [SAHA]
GSM4175320
Control_PBS_1 [invivo]
GSM4175321
Control_PBS_2 [invivo]
GSM4175322
Control_PBS_3 [invivo]
GSM4175323
Control_PBS_4 [invivo]
GSM4175324
Control_LPS_1 [invivo]
GSM4175325
Control_LPS_2 [invivo]
GSM4175326
Control_LPS_3 [invivo]
GSM4175327
Control_LPS_4 [invivo]
GSM4175328
MHD3KO_PBS_1 [invivo]
GSM4175329
MHD3KO_PBS_2 [invivo]
GSM4175330
MHD3KO_PBS_3 [invivo]
GSM4175331
MHD3KO_LPS_1 [invivo]
GSM4175332
MHD3KO_LPS_2 [invivo]
GSM4175333
MHD3KO_LPS_3 [invivo]
GSM4175334
MHD3KO_LPS_4 [invivo]
GSM4175335
NSDAD_PBS_1 [invivo]
GSM4175336
NSDAD_PBS_2 [invivo]
GSM4175337
NSDAD_PBS_3 [invivo]
GSM4175338
NSDAD_PBS_4 [invivo]
GSM4175339
NSDAD_LPS_1 [invivo]
GSM4175340
NSDAD_LPS_2 [invivo]
GSM4175341
NSDAD_LPS_3 [invivo]
This SuperSeries is composed of the following SubSeries:
GSE140573
Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses [GRO-Seq]
GSE140581
Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses [ChIP-Seq]
GSE140610
Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses [RNA-Seq]
Relations
BioProject
PRJNA590241
Download family
Format
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File type/resource
GSE140611_RAW.tar
16.4 Gb
(http)
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TAR (of BEDGRAPH, BIGWIG, TDF)
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