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Series GSE140447 Query DataSets for GSE140447
Status Public on Nov 16, 2019
Title PolII ChIP-Seq performed on naïve WT and TRIM28KO CD4 T cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Critical role for TRIM28 and HP1b/g in the epigenetic control of T cell metabolic reprogramming and effector differentiation
 
Overall design This study was performed in mouse T-cells. It contains ChIP-seq data for RNA Pol II and input DNA. All sequencing were performed in paired-end sequencing runs.
 
Contributor(s) Esnault C
Citation(s) 31776254
Submission date Nov 15, 2019
Last update date Dec 31, 2019
Contact name Sebastian Amigorena
Organization name Institut Curie
Lab Inserm U932
Street address 26 rue D'ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (8)
GSM4162084 CE903: WT_input_1
GSM4162085 CE904: WT_input_2
GSM4162086 CE905: TRIM28KO_input_1
This SubSeries is part of SuperSeries:
GSE140448 Critical role for TRIM28 and HP1beta/gamma in the epigenetic control of T cell metabolic reprograming and effector differentiation
Relations
BioProject PRJNA589768
SRA SRP230186

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140447_Naive_KO_vs_Naive_WT_H3K9ac_diffvsTSS_enh_DOWN.gff.gz 4.5 Kb (ftp)(http) GFF
GSE140447_Naive_KO_vs_Naive_WT_H3K9ac_diffvsTSS_enh_UP.gff.gz 4.5 Kb (ftp)(http) GFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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