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Series GSE139500 Query DataSets for GSE139500
Status Public on Jun 11, 2020
Title Ephydatia muelleri methylome
Organism Ephydatia muelleri
Experiment type Methylation profiling by high throughput sequencing
Summary Ephydatia muelleri is a cosmopolitan freshwater demosponge, with potential to become a model system. We have participated in a large collaborative project to sequence the genome (PRJNA579531), methylome, transcriptome for this species, aiming to better understand the biology of this sponge species. In terms of DNA methylation, it presents relatively low methylation levels compared to the methylomes of other sponges (A. queenslandica and S. ciliatum), suggesting quite a lot of varation within the sponge phylum.
Overall design Profiling of cytosine methylation for Ephydatia muelleri.
Contributor(s) de Mendoza A, Lister R
Citation(s) 32719321
Submission date Oct 28, 2019
Last update date Aug 24, 2020
Contact name Alex de Mendoza
Organization name Queen Mary University of London
Department School of Biological and Behavioural Sciences
Lab de Mendoza Lab
Street address Mile End Road. Fogg Building 5.14
City London
ZIP/Postal code E1 4NS
Country United Kingdom
Platforms (1)
GPL27686 Illumina NovaSeq 6000 (Ephydatia muelleri)
Samples (1)
GSM4142497 mC_Ephydatia_muellerii_WGBS
BioProject PRJNA579987
SRA SRP227249

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139500_RAW.tar 301.5 Mb (http)(custom) TAR (of CGMAP)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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