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Series GSE139215 Query DataSets for GSE139215
Status Public on Oct 22, 2019
Title Non-floral Cascade RNA-seq
Organism Humulus lupulus
Experiment type Expression profiling by high throughput sequencing
Summary This is an RNA-seq study looking at different non-floral hop tissue (stems, meristems and leaves) in the cultivar 'Cascade'
 
Overall design Tissue-specific RNA-seq studies in hop cultivar Cascade. There are two sample replicates for each tissue, including leaf, meristem, and stem.
 
Contributor(s) Padgitt-Cobb L, Henning J, Hendrix D
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Submission date Oct 21, 2019
Last update date Oct 22, 2019
Contact name John Henning
Organization name USDA-ARS
Street address 3450 SW Campus Way
City Corvallis
State/province OR
ZIP/Postal code 97331
Country USA
 
Platforms (1)
GPL27641 Illumina HiSeq 3000 (Humulus lupulus)
Samples (6)
GSM4134148 hopCascadeLeaf_1
GSM4134149 hopCascadeLeaf_2
GSM4134150 hopCascadeMeristem_1
Relations
BioProject PRJNA578754
SRA SRP226517

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139215_hopCascadeLeafCounts.txt.gz 1.8 Mb (ftp)(http) TXT
GSE139215_hopCascadeLeafTranscripts.fasta.gz 14.4 Mb (ftp)(http) FASTA
GSE139215_hopCascadeMeristemCounts.txt.gz 2.1 Mb (ftp)(http) TXT
GSE139215_hopCascadeMeristemTranscripts.fasta.gz 18.5 Mb (ftp)(http) FASTA
GSE139215_hopCascadeStemCounts.txt.gz 2.0 Mb (ftp)(http) TXT
GSE139215_hopCascadeStemTranscripts.fasta.gz 17.1 Mb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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