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Series GSE138799 Query DataSets for GSE138799
Status Public on Jul 29, 2020
Title Transcriptomic Atlas of Embryonic Human Heart Development
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Human heart tissue transcriptome was analyzed over a developmental period of 4-8 weeks post-conception. The analysis identifies several modules of co-expressed genes. These modules were tested for significance and disease relevance using other publically available data. This gene expression data was also integrated with the epigenetic data generated in this study to elucidate complex regulatory networks.
Overall design mRNA was extracted from extracted from human heart tissue from three replicates of 8 time points and coverted to cDNA for sequencing.
Author state "All Raw FASTQ files are being deposited in dbGAP".
Contributor(s) VanOudenhove JJ, Yankee TN, Cotney JL
Citation(s) 32772801
Submission date Oct 11, 2019
Last update date Oct 28, 2020
Contact name Tara N Yankee
Organization name University of Connecticut Health Center
Department Genetics and Developmental Biology
Lab Cotney
Street address 400 Farmington Avenue
City Farmington
State/province CT
ZIP/Postal code 06032
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (24)
GSM4119586 CS12_14131_RNA-seq
GSM4119587 CS13_14401_RNA-seq
GSM4119588 CS13_14479_RNA-seq
BioProject PRJNA577152

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138799_RAW.tar 3.0 Gb (http)(custom) TAR (of BW)
GSE138799_embryonic_heart_counts.tsv.gz 2.4 Mb (ftp)(http) TSV
Raw data not provided for this record
Processed data provided as supplementary file
Processed data are available on Series record

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