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Series GSE138349 Query DataSets for GSE138349
Status Public on Sep 13, 2020
Title Gene expression changes in SSK41 lymphoma cells upon CABIN1 KD
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary CABIN1 is frequently mutated and affected by copy number losses in marginal zone lymphoma from the ocular adnexa. We wanted to examine gene expression changes after CABIN1 KD.
Overall design CABIN1 was knocked down using shRNA in SSK41 B cell lymphoma cells. RNA was extracted from wild type (WT) or KD cells before and after anti-IgM stimulation.
Contributor(s) Magistri M, Lossos IS
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Submission date Oct 02, 2019
Last update date Sep 13, 2020
Contact name Marco Magistri
Organization name University of Miami
Department Psychiatry
Street address 1501 NW 10th Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (12)
GSM4105904 SSK41 WT replicate 1
GSM4105905 SSK41 WT replicate 2
GSM4105906 SSK41 WT replicate 3
BioProject PRJNA575546

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Supplementary file Size Download File type/resource
GSE138349_FPKM_table.xlsx 3.2 Mb (ftp)(http) XLSX
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Processed data are available on Series record

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