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Series GSE13660 Query DataSets for GSE13660
Status Public on Jan 01, 2009
Title Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
Organism Triticum aestivum
Experiment type Expression profiling by array
Summary Crown rot of wheat, caused by Fusarium pseudograminearum and other Fusarium species is an important disease globally. To understand the host response to challenge by Fp, we examined gene exression changes in the stem base of the wheat variety Kennedy, following inoculation with macroconidia using the Affymetrix GeneChip Wheat Genome Array. Induced genes included mainly those with defensive functions such as genes encoding anti-microbial proteins as well as oxidative stress-related proteins, signalling molecules, and proteins involved in both primary and secondary metabolism. This study is the first comprehensive analysis of the wheat transcriptome during crown rot infection and provides new insights into the host processes involved in plant defence against this pathogen.

Overall design There are six samples, three F. pseudograminearum inoculated samples and three mock inoculated samples. Each sample consists of 2cm of stem base from approximately 20 plants.
Contributor(s) Desmond OJ, Manners JM, Schenk PM, Maclean DJ, Kazan K
Citation Desmond, O.J., Manners, J.M., Schenk, P.M., Mclean, D.J. and Kazan K. Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum. Physiological and Molecular Plant Pathology. doi:10.1016/j.pmpp.2008.12.001.
Submission date Nov 19, 2008
Last update date Dec 04, 2018
Contact name Brendan Kidd
Organization name CSIRO
Department Plant Industry
Street address 306 Carmody Road
City St Lucia
State/province QLD
ZIP/Postal code 4067
Country Australia
Platforms (1)
GPL3802 [wheat] Affymetrix Wheat Genome Array
Samples (6)
GSM343678 Wheat var. Kennedy_control_rep1
GSM343682 Wheat var. Kennedy_control_rep2
GSM343685 Wheat var. Kennedy_control_rep3
BioProject PRJNA110211

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13660_RAW.tar 32.0 Mb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data included within Sample table

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