GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE134798
Query DataSets for GSE134798
Status
Public on Jul 07, 2020
Title
Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32710624
Submission date
Jul 24, 2019
Last update date
Oct 06, 2020
Contact name
Jose Manuel Garcia-Manteiga
E-mail(s)
garciamanteiga.josemanuel@hsr.it
Organization name
OSR - San Raffaele Scientific Institute
Department
Center for Translational Genomics and Bioinformatics
Street address
Via Olgettina 58
City
Milan
State/province
--
ZIP/Postal code
20132
Country
Italy
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (34)
Less...
More...
GSM3970404
shCTRL RNA-Seq Replicate A
GSM3970405
shCTRL RNA-Seq Replicate B
GSM3970406
shCTRL RNA-Seq Replicate C
GSM3970407
shHMGB1 RNA-Seq Replicate A
GSM3970408
shHMGB1 RNA-Seq Replicate B
GSM3970409
shHMGB1 RNA-Seq Replicate C
GSM3970410
shCTRL ATAC-Seq
GSM3970411
shHMGB1 ATAC-Seq
GSM3970412
shCTRL Bliss 10 Gy Replicate 1
GSM3970413
shCTRL Bliss 10 Gy Replicate 2
GSM3970414
shCTRL Bliss 3 Gy Replicate 1
GSM3970415
shCTRL Bliss 3 Gy Replicate 2
GSM3970416
shCTRL Bliss 5 Gy Replicate 1
GSM3970417
shCTRL Bliss 5 Gy Replicate 2
GSM3970418
shCTRL Bliss Untreated Replicate 1
GSM3970419
shCTRL Bliss Untreated Replicate 2
GSM3970420
shHMGB1 Bliss 10 Gy Replicate 1
GSM3970421
shHMGB1 Bliss 10 Gy Replicate 2
GSM3970422
shHMGB1 Bliss 3 Gy Replicate 1
GSM3970423
shHMGB1 Bliss 3 Gy Replicate 2
GSM3970424
shHMGB1 Bliss 5 Gy Replicate 1
GSM3970425
shHMGB1 Bliss 5 Gy Replicate 2
GSM3970426
shHMGB1 Bliss Untreated Replicate 1
GSM3970427
shHMGB1 Bliss Untreated Replicate 2
GSM4520693
Bliss 0 Gy 0 Nac Replicate 1
GSM4520694
Bliss 10 Gy 0 Nac Replicate 1
GSM4520695
Bliss 0 Gy 10 Nac Replicate 1
GSM4520696
Bliss 10 Gy 10 Nac Replicate 1
GSM4520697
Bliss 0 Gy 0 Nac Replicate 2
GSM4520698
Bliss 10 Gy 0 Nac Replicate 2
GSM4520699
Bliss 0 Gy 10 Nac Replicate 2
GSM4520700
Bliss 10 Gy 10 Nac Replicate 2
GSM4520701
Bliss 0 Gy 0 Nac Replicate 3
GSM4520702
Bliss 10 Gy 0 Nac Replciate 3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE134795
Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (RNA-seq)
GSE134796
Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (ATAC-seq)
GSE134797
Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (BLISS)
GSE150016
Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells [BLISS human]
Relations
BioProject
PRJNA556429
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE134798_RAW.tar
2.3 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH, NARROWPEAK)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|