NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE134772 Query DataSets for GSE134772
Status Public on Aug 14, 2019
Title Genome-wide DNA methylation analysis of cervical scrapes samples
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome-wide DNA methylation profiles in liquid based cytology (LBC) cervical scrapes samples was assessed using the Illumina Infinium Methylation850 BeadChip V1.0B4. The purpose of this study was to identify new candidate genes that are differentially methylated in squamous cell carcinoma compared to the DNA samples from cervical intraepithelial neoplasia grade (CIN) and normal cervical scrapes.
 
Overall design In this study 3 normal cervical samples (HPV negative), 4 samples with CIN lesions (HPV16 positive) and 3 cervical cancer samples (HPV16 positive) were included.
 
Contributor(s) Wang R, Li Y, Du P, Zhang X, Li X, Cheng G
Citation(s) 31369759
Submission date Jul 24, 2019
Last update date Aug 14, 2019
Contact name wang rui jie
E-mail(s) ruijie1209@126.com
Phone 15936296950
Organization name The Third Affiliated Hospital of Zhengzhou University, Zhengzhou University
Street address No. 7 Front Kangfu Street, Er'qi District, Zhengzhou, Henan, China
City Henan
State/province zhengzhou
ZIP/Postal code 450000
Country China
 
Platforms (1)
GPL23976 Illumina Infinium HumanMethylation850 BeadChip
Samples (10)
GSM3967212 genomic DNA from cervical scrapes 1 [Sample1_x893]
GSM3967213 genomic DNA from cervical scrapes 4 [Sample2_x130]
GSM3967214 genomic DNA from cervical scrapes 7 [Sample3_x158]
Relations
BioProject PRJNA556379

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134772_RAW.tar 141.1 Mb (http)(custom) TAR (of IDAT)
GSE134772_non_normalized.txt.gz 45.7 Mb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table
Raw data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap