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GEO accession:
Series GSE134680
Query DataSets for GSE134680
Status
Public on Nov 26, 2019
Title
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31794382
Submission date
Jul 22, 2019
Last update date
Dec 04, 2019
Contact name
David Michael Suter
Organization name
École polytechnique fédérale de Lausanne
Department
Institute of Bioengineering
Lab
UPSUTER
Street address
EPFL SV-IN Station 19
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (118)
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More...
GSM3961031
ATAC_SOX2ON_26h_1
GSM3961032
ATAC_SOX2OFF_26h_1
GSM3961034
ATAC_SOX2ON_26h_2
GSM3961035
ATAC_SOX2OFF_26h_2
GSM3961037
ATAC_SOX2ON_40h_1
GSM3961038
ATAC_SOX2OFF_40h_1
GSM3961040
ATAC_SOX2ON_40h_2
GSM3961041
ATAC_SOX2OFF_40h_2
GSM3961043
ATAC_OCT4OFF_S2iL_1
GSM3961044
ATAC_OCT4ON_S2iL_1
GSM3961045
ATAC_OCT4OFF_S2iL_2
GSM3961047
ATAC_OCT4ON_S2iL_2
GSM3963087
ChIP_OCT4_SOX2ON_26h_1
GSM3963088
ChIP_OCT4_SOX2OFF_26h_1
GSM3963089
ChIP_OCT4_SOX2ON_26h_2
GSM3963090
ChIP_OCT4_SOX2OFF_26h_2
GSM3963091
ChIP_BRG1_SOX2ON_26h_1
GSM3963092
ChIP_BRG1_SOX2OFF_26h_1
GSM3963093
ChIP_BRG1_SOX2ON_26h_2
GSM3963094
ChIP_BRG1_SOX2OFF_26h_2
GSM3963095
ChIP_H3K27ac_SOX2ON_26h_1
GSM3963096
ChIP_H3K27ac_SOX2OFF_26h_1
GSM3963097
ChIP_H3K27ac_SOX2ON_26h_2
GSM3963098
ChIP_H3K27ac_SOX2OFF_26h_2
GSM3963099
ChIP_H3K27ac_OCT4ON_S2iL_1
GSM3963100
ChIP_H3K27ac_OCT4OFF_S2iL_1
GSM3963101
ChIP_H3K27ac_OCT4ON_S2iL_2
GSM3963102
ChIP_H3K27ac_OCT4OFF_S2iL_2
GSM3963174
ATAC_MD-OCT4_EG1_1
GSM3963175
ATAC_MD-OCT4_LG1_1
GSM3963176
ATAC_MD-OCT4_S_1
GSM3963177
ATAC_MD-OCT4_SG2_1
GSM3963178
ATAC_MD*-OCT4_EG1_1
GSM3963179
ATAC_MD*-OCT4_LG1_1
GSM3963180
ATAC_MD*-OCT4_S_1
GSM3963181
ATAC_MD*-OCT4_SG2_1
GSM3963182
ATAC_MD-OCT4_EG1_2
GSM3963183
ATAC_MD-OCT4_LG1_2
GSM3963184
ATAC_MD-OCT4_S_2
GSM3963185
ATAC_MD-OCT4_SG2_2
GSM3963186
ATAC_MD*-OCT4_EG1_2
GSM3963187
ATAC_MD*-OCT4_LG1_2
GSM3963188
ATAC_MD*-OCT4_S_2
GSM3963189
ATAC_MD*-OCT4_SG2_2
GSM3963190
ATAC_MD-OCT4_noDOX_1
GSM3963191
ATAC_MD*-OCT4_noDOX_1
GSM3963192
ATAC_MD-OCT4_noDOX_2
GSM3963193
ATAC_MD*-OCT4_noDOX_2
GSM3963194
ChIP_MD-OCT4_EG1_H3K27ac_1
GSM3963195
ChIP_MD-OCT4_LG1_H3K27ac_1
GSM3963196
ChIP_MD-OCT4_S_H3K27ac_1
GSM3963197
ChIP_MD-OCT4_SG2_H3K27ac_1
GSM3963198
ChIP_MD*-OCT4_EG1_H3K27ac_1
GSM3963199
ChIP_MD*-OCT4_LG1_H3K27ac_1
GSM3963200
ChIP_MD*-OCT4_S_H3K27ac_1
GSM3963201
ChIP_MD*-OCT4_SG2_H3K27ac_1
GSM3963202
ChIP_MD-OCT4_EG1_H3K27ac_2
GSM3963203
ChIP_MD-OCT4_LG1_H3K27ac_2
GSM3963204
ChIP_MD-OCT4_S_H3K27ac_2
GSM3963205
ChIP_MD-OCT4_SG2_H3K27ac_2
GSM3963206
ChIP_MD*-OCT4_EG1_H3K27ac_2
GSM3963207
ChIP_MD*-OCT4_LG1_H3K27ac_2
GSM3963208
ChIP_MD*-OCT4_S_H3K27ac_2
GSM3963209
ChIP_MD*-OCT4_SG2_H3K27ac_2
GSM3963210
ATAC_OCT4-AID_EarlyG1_IAA_1
GSM3963211
ATAC_OCT4-AID_LateG1_IAA_1
GSM3963212
ATAC_OCT4-AID_S_IAA_1
GSM3963213
ATAC_OCT4-AID_SG2_IAA_1
GSM3963214
ATAC_OCT4-AID_EarlyG1_ctrl_1
GSM3963215
ATAC_OCT4-AID_LateG1_ctrl_1
GSM3963216
ATAC_OCT4-AID_S_ctrl_1
GSM3963217
ATAC_OCT4-AID_SG2_ctrl_1
GSM3963218
ATAC_OCT4-AID_EarlyG1_IAA_2
GSM3963219
ATAC_OCT4-AID_LateG1_IAA_2
GSM3963220
ATAC_OCT4-AID_S_IAA_2
GSM3963221
ATAC_OCT4-AID_EarlyG1_ctrl_2
GSM3963222
ATAC_OCT4-AID_LateG1_ctrl_2
GSM3963223
ATAC_OCT4-AID_S_ctrl_2
GSM3963224
ATAC_OCT4-AID_EarlyG1_IAA_3
GSM3963225
ATAC_OCT4-AID_LateG1_IAA_3
GSM3963226
ATAC_OCT4-AID_S_IAA_3
GSM3963227
ATAC_OCT4-AID_SG2_IAA_3
GSM3963228
ATAC_OCT4-AID_EarlyG1_ctrl_3
GSM3963229
ATAC_OCT4-AID_LateG1_ctrl_3
GSM3963230
ATAC_OCT4-AID_S_ctrl_3
GSM3963231
ATAC_OCT4-AID_SG2_ctrl_3
GSM3963232
ATAC_OCT4-AID_IAAwash_EG1_1
GSM3963233
ATAC_OCT4-AID_IAAwash_LG1_1
GSM3963234
ATAC_OCT4-AID_IAAwash_S_1
GSM3963235
ATAC_OCT4-AID_IAAwash_SG2_1
GSM3963236
ATAC_OCT4-AID_controlwash_EG1_1
GSM3963237
ATAC_OCT4-AID_controlwash_LG1_1
GSM3963238
ATAC_OCT4-AID_controlwash_S_1
GSM3963239
ATAC_OCT4-AID_controlwash_SG2_1
GSM3963240
ATAC_OCT4-AID_IAAwash_EG1_2
GSM3963241
ATAC_OCT4-AID_IAAwash_LG1_2
GSM3963242
ATAC_OCT4-AID_IAAwash_S_2
GSM3963243
ATAC_OCT4-AID_IAAwash_SG2_2
GSM3963244
ATAC_OCT4-AID_controlwash_EG1_2
GSM3963245
ATAC_OCT4-AID_controlwash_LG1_2
GSM3963246
ATAC_OCT4-AID_controlwash_S_2
GSM3963247
ATAC_OCT4-AID_controlwash_SG2_2
GSM3963248
ATAC_OCT4-AID_untreated_1
GSM3963249
ATAC_OCT4-AID_IAA_30m_1
GSM3963250
ATAC_OCT4-AID_IAA_1h_1
GSM3963251
ATAC_OCT4-AID_IAA_2h_1
GSM3963252
ATAC_OCT4-AID_IAA_3h_1
GSM3963253
ATAC_OCT4-AID_IAA_4h_1
GSM3963254
ATAC_OCT4-AID_IAA_6h_1
GSM3963255
ATAC_OCT4-AID_IAA_10h_1
GSM3963256
ATAC_OCT4-AID_untreated_2
GSM3963257
ATAC_OCT4-AID_IAA_30m_2
GSM3963258
ATAC_OCT4-AID_IAA_1h_2
GSM3963259
ATAC_OCT4-AID_IAA_2h_2
GSM3963260
ATAC_OCT4-AID_IAA_3h_2
GSM3963261
ATAC_OCT4-AID_IAA_4h_2
GSM3963262
ATAC_OCT4-AID_IAA_6h_2
GSM3963263
ATAC_OCT4-AID_IAA_10h_2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE134652
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [OCT4OFF SOX2OFF ATAC-seq]
GSE134669
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [OCT4OFF SOX2OFF ChIP-seq]
GSE134673
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [MD-OCT4 ATAC-seq]
GSE134674
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [MD-OCT4 ChIP-seq]
GSE134675
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [OCT4-AID ATAC-seq]
Relations
BioProject
PRJNA556148
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Format
SOFT formatted family file(s)
SOFT
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TXT
Supplementary data files not provided
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