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GEO accession:
Series GSE134125
Query DataSets for GSE134125
Status
Public on Aug 01, 2019
Title
The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31371437
Submission date
Jul 11, 2019
Last update date
Aug 05, 2019
Contact name
Panagiotis Papasaikas
E-mail(s)
panp80@gmail.com
Phone
+41791074582
Organization name
Friedrich Miescher Institute
Street address
66 Maulbeerstrasse
City
Basel
ZIP/Postal code
CH-4058
Country
Switzerland
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (76)
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More...
GSM3734486
Trim71_CRAC_rep1
GSM3734487
Trim71_CRAC_rep2
GSM3734488
Trim71_CRAC_rep3
GSM3734489
Trim71_CRAC_rep4
GSM3734490
Trim71_NHL_mutant_CRAC_rep1
GSM3734491
Trim71_NHL_mutant_CRAC_rep2
GSM3734492
Trim71_RING_mutant_CRAC_rep1
GSM3734493
Trim71_RING_mutant_CRAC_rep2
GSM3755880
W1
GSM3755881
W2
GSM3755882
K1
GSM3755883
K2
GSM3755884
mutMbnl1
GSM3755885
mutMbnl2
GSM3755886
Mbnl1high1
GSM3755887
Mbnl1high2
GSM3755888
mESC_WT_batch1_rep1
GSM3755889
mESC_Trim71KO_batch1_rep1
GSM3755890
mESC_WT_batch1_rep2
GSM3755891
mESC_Trim71KO_batch1_rep2
GSM3755892
mESC_WT_batch2_rep1
GSM3755893
mESC_Trim71KO_batch2_rep1
GSM3755894
mESC_WT_batch2_rep2
GSM3755895
mESC_Trim71KO_batch2_rep2
GSM3755896
mESC_WT_rep1
GSM3755897
mESC_WT_rep2
GSM3755898
mESC_WT_rep3
GSM3755899
mESC_Trim71KO_rep1
GSM3755900
mESC_Trim71KO_rep2
GSM3755901
mESC_Trim71KO_rep3
GSM3755902
mESC_Trim71RING_rep1
GSM3755903
mESC_Trim71RING_rep2
GSM3755904
mESC_Trim71RING_rep3
GSM3755905
mESC_Trim71NHL_rep1
GSM3755906
mESC_Trim71NHL_rep2
GSM3755907
mESC_Trim71NHL_rep3
GSM3755908
mESC_WT_LIF_exp1_rep1
GSM3755909
mESC_Trim71KO_LIF_exp1_rep1
GSM3755910
mESC_WT_LIF_exp2_rep1
GSM3755911
mESC_WT_LIF_exp2_rep2
GSM3755912
mESC_Trim71KO_LIF_exp2_rep1
GSM3755913
mESC_Trim71KO_LIF_exp2_rep2
GSM3755914
mESC_Trim71NHL_LIF_exp2_rep1
GSM3755915
mESC_Trim71NHL_LIF_exp2_rep2
GSM3755916
mESC_Trim71RING_LIF_exp2_rep1
GSM3755917
mESC_Trim71RING_LIF_exp2_rep2
GSM3755918
Ne4C_WT_exp1_rep1
GSM3755919
Ne4C_WT_exp1_rep2
GSM3755920
Ne4C_WT_exp1_rep3
GSM3755921
Ne4C_Trim71KO_exp1_rep1
GSM3755922
Ne4C_Trim71KO_exp1_rep2
GSM3755923
Ne4C_Trim71KO_exp1_rep3
GSM3755924
Ne4C_WT_exp2_rep1
GSM3755925
Ne4C_WT_exp2_rep2
GSM3755926
Ne4C_WT_exp2_rep3
GSM3755927
Ne4C_Trim71KO_exp2_rep1
GSM3755928
Ne4C_Trim71KO_exp2_rep2
GSM3755929
Ne4C_Trim71KO_exp2_rep3
GSM3755930
Ne4C_WT_exp3_rep1
GSM3755931
Ne4C_WT_exp3_rep2
GSM3755932
Ne4C_Trim71KO_exp3_rep1
GSM3755933
Ne4C_Trim71KO_exp3_rep2
GSM3755934
Huh7_WT_rep1
GSM3755935
Huh7_WT_rep2
GSM3755936
Huh7_WT_rep3
GSM3755937
Huh7_Trim71KO_rep1
GSM3755938
Huh7_Trim71KO_rep2
GSM3755939
Huh7_Trim71KO_rep3
GSM3755940
mESC_rpf_WT_batch1_rep1
GSM3755941
mESC_rpf_Trim71KO_batch1_rep1
GSM3755942
mESC_rpf_WT_batch1_rep2
GSM3755943
mESC_rpf_Trim71KO_batch1_rep2
GSM3755944
mESC_rpf_WT_batch2_rep1
GSM3755945
mESC_rpf_Trim71KO_batch2_rep1
GSM3755946
mESC_rpf_WT_batch2_rep2
GSM3755947
mESC_rpf_Trim71KO_batch2_rep2
This SuperSeries is composed of the following SubSeries:
GSE130248
The RNA hairpin binder TRIM71 modulates alternative splicing by repressing Mbnl1
GSE130897
The RNA hairpin binder TRIM71 modulates alternative splicing by repressing Mbnl1 [RNA-seq]
GSE130898
The RNA hairpin binder TRIM71 modulates alternative splicing by repressing Mbnl1 [RNA-seq & Ribo-seq]
Relations
BioProject
PRJNA554208
Download family
Format
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Supplementary file
Size
Download
File type/resource
GSE134125_RAW.tar
10.3 Mb
(http)
(custom)
TAR (of BIGWIG, TSV)
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