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Series GSE134021 Query DataSets for GSE134021
Status Public on Jul 10, 2019
Title H3K36me3 ChIP-seq of 2 rice lines D248 and SH881
Organism Oryza sativa
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A major maturity duration-regulatory gene, Early flowering-completely dominant (Ef-cd) was cloning in this study. The Ef-cd locus gives rise to a long noncoding RNA (lncRNA) antisense transcript overlapping the OsSOC1 gene. Ef-cd lncRNA expression positively correlates with the expression of OsSOC1 and H3K36me3 deposition.
 
Overall design Fresh leaf blades of 40 d seedlings of early-maturing NIL D248 (BC5F11) and its recurrent parent SH881 (Shuhui881) were harvested for fixation and immunoprecipitation.
 
Contributor(s) Fang J, Zhang F, Zhao F, Li Z, Deng X, Chu C
Citation(s) 31451662
Submission date Jul 09, 2019
Last update date Sep 02, 2019
Contact name Faming Chen
E-mail(s) chenfaming@picb.ac.cn
Organization name Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
Department CAS-MPG Partner Institute for Computational Biology
Lab CAS Key Laboratory of Computational Biology
Street address 320 Yue Yang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (1)
GPL13160 Illumina HiSeq 2000 (Oryza sativa)
Samples (2)
GSM3933475 H3K36me3 ChIP-seq of D248
GSM3933476 H3K36me3 ChIP-seq of SH881
Relations
BioProject PRJNA553493
SRA SRP213861

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134021_RAW.tar 198.9 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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