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Series GSE134021 Query DataSets for GSE134021
Status Public on Jul 10, 2019
Title H3K36me3 ChIP-seq of 2 rice lines D248 and SH881
Organism Oryza sativa
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A major maturity duration-regulatory gene, Early flowering-completely dominant (Ef-cd) was cloning in this study. The Ef-cd locus gives rise to a long noncoding RNA (lncRNA) antisense transcript overlapping the OsSOC1 gene. Ef-cd lncRNA expression positively correlates with the expression of OsSOC1 and H3K36me3 deposition.
Overall design Fresh leaf blades of 40 d seedlings of early-maturing NIL D248 (BC5F11) and its recurrent parent SH881 (Shuhui881) were harvested for fixation and immunoprecipitation.
Contributor(s) Fang J, Zhang F, Zhao F, Li Z, Deng X, Chu C
Citation(s) 31451662
Submission date Jul 09, 2019
Last update date Sep 02, 2019
Contact name Faming Chen
Organization name Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
Department CAS-MPG Partner Institute for Computational Biology
Lab CAS Key Laboratory of Computational Biology
Street address 320 Yue Yang Road
City Shanghai
ZIP/Postal code 200031
Country China
Platforms (1)
GPL13160 Illumina HiSeq 2000 (Oryza sativa)
Samples (2)
GSM3933475 H3K36me3 ChIP-seq of D248
GSM3933476 H3K36me3 ChIP-seq of SH881
BioProject PRJNA553493
SRA SRP213861

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134021_RAW.tar 198.9 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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