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Series GSE133990 Query DataSets for GSE133990
Status Public on Jul 18, 2019
Title FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation
Organism Danio rerio
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Using ChIP-Seq we examined the targets of FoxH1 in zebrafish embryos at the 6hpf epiboly-stage. The revealed reads could be mapped to more than 16,000 peaks included also the known targets like ndr1, lft2, pitx2, flh, foxa3 and lhx1a. Relevant for our study, we identify the conserved microRNA-430 family (miR-430) as a novel target of FoxH1.
 
Overall design eGFP-tagged FoxH1 was used for the assay.
 
Contributor(s) Fischer P, Rieder D, Meyer D
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Submission date Jul 08, 2019
Last update date Jul 20, 2019
Contact name Dietmar Rieder
E-mail(s) dietmar.rieder@i-med.ac.at
Phone +43512900371402
Organization name Innsbruck Medical University
Department Biocenter
Lab Division of Bioinformatics
Street address Innrain 80
City Innsbruck
ZIP/Postal code 6020
Country Austria
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (1)
GSM3932029 eGFP-tagged FoxH1
Relations
BioProject PRJNA553260
SRA SRP213748

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133990_RAW.tar 240.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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