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| Status |
Public on Jul 10, 2019 |
| Title |
Maize transcriptomic responses to Pantoea stewartii vascular infection in B73 and pan1 (R1) lines (experiment A). |
| Organism |
Zea mays |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To gain insight into the genetic and molecular mechanisms that underlie the enhanced resistance of pan1 lines to vascular spread of P. stewartii, we used RNA-seq to compare the transcriptomes of B73 and pan1 lines one day after mock or bacterial inoculation of leaf veins, being this the first analysis of maize transcriptional responses to P. stewartii infection.
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| Overall design |
24 samples were analyzed (3 genotypes x 2 treatments x 4 replicates). Genotyopes: B73, pan1-ems/pan1-ems (R1) and pan1-ems/+ (R1/B73). Treatments: P. stewartii-GFP infection and Mock inoculation (serving as wounding control). Four biological replicates were analyzed.
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| Contributor(s) |
Doblas-Ibanez P, Smith L |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jun 25, 2019 |
| Last update date |
Jul 10, 2019 |
| Contact name |
Paula Doblas Ibanez |
| E-mail(s) |
pdoblasibanez@ucsd.edu
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| Organization name |
UCSD
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| Lab |
Laurie Smith lab
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| Street address |
9500 Gilman Dr
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| City |
La Jolla |
| State/province |
California |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platforms (1) |
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| Samples (24)
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| This SubSeries is part of SuperSeries: |
| GSE133305 |
Maize transcriptomic responses to Pantoea stewartii vascular infection in B73 and pan1 lines |
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| Relations |
| BioProject |
PRJNA551023 |
| SRA |
SRP212080 |
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