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Series GSE131063 Query DataSets for GSE131063
Status Public on Aug 15, 2019
Title Genome-wide identification of accessible chromatin regions in bumblebee genome (Bombus terrestris) by ATAC-seq
Organism Bombus terrestris
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Bumblebees (Hymenoptera: Apidae) are important pollinating insects that play pivotal roles in crop production and natural ecosystem services. To achieve a comprehensive profile of accessible chromatin regions and provide clues for all the possible regulatory elements in bumblebee genome, we did ATAC-seq for bumblebee samples that deriving from its four distinct developmental stages: egg, larva, pupa, and adult, respectively. The identified accessible chromatin regions of the study will provide important resources for uncovering promoters, enhancers and other regulatory elements of bumblebee genome, and such data will expand our understanding of bumblebee biology and facilitate the cloning of bumblebee genes that controlling important traits, which in turn will be useful in the upcoming molecular improvement of bumblebees.
 
Overall design ATAC-seq was performed on bombus terrestris workers in four developmental stages (egg, larva, pupa, adult). Chromatin open regions and nucleosomes were called for each time point samples.
 
Contributor(s) Zhao X, Sun C
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Submission date May 12, 2019
Last update date Aug 17, 2019
Contact name Xiaomeng Zhao
E-mail(s) zhaoxm1027@163.com
Organization name Institute of Apicultural Research, Chinese Academy of Agricultural Sciences
Street address No.1 Xiangshan Beigou, Haidian District
City Beijing
ZIP/Postal code 100093
Country China
 
Platforms (1)
GPL26656 BGISEQ-500 (Bombus terrestris)
Samples (4)
GSM3762913 Bt_adult_ATACseq
GSM3762914 Bt_pupa_ATACseq
GSM3762915 Bt_larva_ATACseq
Relations
BioProject PRJNA542529
SRA SRP198175

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Supplementary file Size Download File type/resource
GSE131063_RAW.tar 14.9 Mb (http)(custom) TAR (of BED, NARROWPEAK)
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Raw data are available in SRA
Processed data provided as supplementary file

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