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Series GSE130939 Query DataSets for GSE130939
Status Public on May 29, 2019
Title Transcriptome analysts of a growth domain and a differentiated domain of the medaka gill.
Organism Oryzias latipes
Experiment type Expression profiling by high throughput sequencing
Summary Medaka gill filaments contain stem cells in their most apical domains and differentiated cells of diverse lineages in central and basal domains. We aim at identifying differentially expressed genes among these two functionally different regions.
 
Overall design The apical and central domain of filaments were extracted using surgery scissors under a dissection binocular. Total RNA was obtained from both samples and used to prepare poliA libraries.
 
Contributor(s) Centanin L, Buono L
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Submission date May 09, 2019
Last update date May 31, 2019
Contact name Lorena Buono
Organization name CABD
Street address Carretera de Utrera km 1
City Sevilla
State/province Sevilla
ZIP/Postal code 41013
Country Spain
 
Platforms (1)
GPL23039 Illumina NextSeq 500 (Oryzias latipes)
Samples (6)
GSM3756543 Central A - Library1
GSM3756544 Central B
GSM3756545 Central A-- Library2
Relations
BioProject PRJNA542059
SRA SRP197247

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130939_DEGs_analysis.txt.gz 770.3 Kb (ftp)(http) TXT
GSE130939_RAW.tar 3.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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