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GEO accession:
Series GSE130374
Query DataSets for GSE130374
Status
Public on Dec 27, 2019
Title
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture
Organism
Homo sapiens
Experiment type
Other
Genome variation profiling by genome tiling array
Genome variation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31698451
Submission date
Apr 26, 2019
Last update date
Dec 27, 2019
Contact name
David M Gilbert
Organization name
Florida State University
Department
Biology
Lab
Gilbert
Street address
319 Stadium Drive
City
Tallahassee
State/province
FL
ZIP/Postal code
32306-4295
Country
USA
Platforms (4)
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GPL14120
NimbleGen Human CGH 385K Whole-Genome Tiling Array [80101_HG18_WG_CGH_v2_X1]
GPL14965
NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3]
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18318
NimbleGen Human 6x630K CGH Whole Genome tiling array [100710_HG19_WG_CGH_PERF_UX6]
Samples (111)
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GSM3736943
xenograft from bone marrow case 1 passage 1 [Case1P1R1]
GSM3736944
xenograft from bone marrow case 1 passage 1 [Case1P1R2]
GSM3736945
xenograft from bone marrow case 1 passage 1 [Case1P1R3]
GSM3736946
xenograft from bone marrow case 21 passage 1 [Case21P1]
GSM3736947
xenograft from bone marrow case 21 passage 2 [Case21P2]
GSM3736948
xenograft from bone marrow case 21 passage 3 [Case21P3]
GSM3736949
xenograft from bone marrow case 4 passage 1 [Case4P1R1]
GSM3736950
xenograft from bone marrow case 4 passage 1 [Case4P1R2]
GSM3736951
xenograft from bone marrow case 4 passage 1 [Case4P1R3]
GSM3736952
xenograft from bone marrow case 4 passage 1 [Case4P1R4]
GSM3736953
xenograft from bone marrow case 4 passage 1 [Case4P1R5]
GSM3736954
xenograft from bone marrow case 4 passage 1 [Case4P1R6]
GSM3736955
bone marrow case 4 [Case4PatR1]
GSM3736956
bone marrow case 4 [Case4PatR2]
GSM3736957
xenograft from bone marrow case 5 passage 1 [Case5P1R1]
GSM3736958
xenograft from bone marrow case 5 passage 1 [Case5P1R2]
GSM3736959
xenograft from bone marrow case 5 passage 2 [Case5P2R1]
GSM3736960
xenograft from bone marrow case 5 passage 2 [Case5P2R2]
GSM3736961
xenograft from bone marrow case 5 passage 3 [Case5P3R1]
GSM3736962
xenograft from bone marrow case 5 passage 3 [Case5P3R2]
GSM3736963
cord blood CD34+ cells expanded in vitro in serum-free media + 5 growth factors for 4 days [CD34posR1]
GSM3736964
cord blood CD34+ cells expanded in vitro in serum-free media + 5 growth factors for 4 days [CD34posR2]
GSM3736965
cell line MOLM14 [MOLM14R1]
GSM3736966
cell line MOLM14 [MOLM14R2]
GSM3736967
Day 6 of megakaryocytic differentiation of CD34+ cells. [MPBTPOd6]
GSM3736968
specimen PAIXMD [PAIXMD]
GSM3736969
specimen PAIXSD [PAIXSD]
GSM3736970
specimen PAKKCA [PAKKCA]
GSM3736971
specimen PAKTAL [PAKTAL]
GSM3736972
specimen PAKUGY [PAKUGY]
GSM3736973
specimen PAKXBW [PAKXBW]
GSM3736974
specimen PALCRG [PALCRG]
GSM3736975
specimen PALHWG [PALHWG]
GSM3736976
specimen PAPSSK [PAPSSK]
GSM3736977
specimen PAPSSKR2 [PAPSSKR2]
GSM3736978
specimen PARTEA [PARTEA]
GSM3736979
specimen PARTSP [PARTSP]
GSM3736980
specimen PASKSL [PASKSL]
GSM3736981
specimen PASUWV [PASUWV]
GSM3736982
specimen PASXSA [PASXSA]
GSM3736983
specimen PASZMP [PASZMP]
GSM3736984
specimen PATDVJ [PATDVJ]
GSM3736985
specimen PATMBG [PATMBG]
GSM3736986
specimen PATNGJ [PATNGJ]
GSM3736987
specimen PATXMJ [PATXMJ]
GSM3736988
specimen 10-356 [X10356R2]
GSM3736989
specimen 10-764 [X10764R1]
GSM3736990
specimen 10-795 [X10795R1]
GSM3736991
specimen 10-795 [X10795R2]
GSM3736992
specimen 10-799 [X10799R2]
GSM3736993
specimen 11-015 [X11015R3]
GSM3736994
specimen 11-064 [X11064R2]
GSM3736995
specimen 11-128 [X11128R2]
GSM3736996
specimen 11-129 [X11129R2]
GSM3736997
specimen 11-132 [X11132R2]
GSM3736998
specimen 11-202 [X11202R1]
GSM3736999
specimen 11-253 [X11253F1D]
GSM3737000
specimen 12-006 [X12006R1]
GSM3737001
MPBCD34 [re-analysis]
GSM3737002
MPBEpoD3 [re-analysis]
GSM3737003
MPBEpoD5 [re-analysis]
GSM3737004
MPBMyeD3 [re-analysis]
GSM3737005
MPBMyeD5 [re-analysis]
GSM3737006
AML5_10K_AML-Early S Fraction
GSM3737007
AML5_10K_AML-Late S Fraction
GSM3737008
AML5_5K_AML-Early S Fraction
GSM3737009
AML5_5K_AML-Late S Fraction
GSM3737010
CD34negCD19posCB14-Early S Fraction
GSM3737011
CD34negCD19posCB14-Late S Fraction
GSM3737012
CD34negCD19posCB14DAPI-Early S Fraction
GSM3737013
CD34negCD19posCB14DAPI-Late S Fraction
GSM3737014
CD34negCD19posROR1negCB96-Early S Fraction
GSM3737015
CD34negCD19posROR1negCB96-Late S Fraction
GSM3737016
CD34negCD19posROR1negCB96DAPI-Early S Fraction
GSM3737017
CD34negCD19posROR1negCB96DAPI-Late S Fraction
GSM3737018
CD34negCD19posROR1posCB96-Early S Fraction
GSM3737019
CD34negCD19posROR1posCB96-Late S Fraction
GSM3737020
CD34negCD19posROR1posCB96DAPI-Early S Fraction
GSM3737021
CD34negCD19posROR1posCB96DAPI-Late S Fraction
GSM3737022
CD34posCD19posCB14-Early S Fraction
GSM3737023
CD34posCD19posCB14-Late S Fraction
GSM3737024
CD34posCD19posCB14DAPI-Early S Fraction
GSM3737025
CD34posCD19posCB14DAPI-Late S Fraction
GSM3737026
CD34posCD19posCB96-Early S Fraction
GSM3737027
CD34posCD19posCB96-Late S Fraction
GSM3737028
CD34posCD19posROR1negCB96DAPI-Early S Fraction
GSM3737029
CD34posCD19posROR1negCB96DAPI-Late S Fraction
GSM3737030
CD34posCD19posROR1posCB96DAPI-Early S Fraction
GSM3737031
CD34posCD19posROR1posCB96DAPI-Late S Fraction
GSM3737032
CD34posCD38negCB14-Early S Fraction
GSM3737033
CD34posCD38negCB14-Late S Fraction
GSM3737034
CD34posCD38negCB96-Early S Fraction
GSM3737035
CD34posCD38negCB96-Late S Fraction
GSM3737036
KasumiR1-Early S Fraction
GSM3737037
KasumiR1-Late S Fraction
GSM3737038
KasumiR2-Early S Fraction
GSM3737039
KasumiR2-Late S Fraction
GSM3737040
PALTWS-G1 Fraction
GSM3737041
PALTWS-S Fraction
GSM3737042
PANBUL-G1 Fraction
GSM3737043
PANBUL-S Fraction
GSM3737044
X697R1-Early S Fraction
GSM3737045
X697R1-Late S Fraction
GSM3737046
X697R2-Early S Fraction
GSM3737047
X697R2-Late S Fraction
GSM3737048
X697R3-Early S Fraction
GSM3737049
X697R3-Late S Fraction
GSM3737050
X697R4-Early S Fraction
GSM3737051
X697R4-Late S Fraction
GSM3737052
X697R5-Early S Fraction
GSM3737053
X697R5-Late S Fraction
This SuperSeries is composed of the following SubSeries:
GSE130372
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture [Repli-Chip]
GSE130373
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture [Repli-Seq]
Relations
BioProject
PRJNA539934
Download family
Format
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File type/resource
GSE130374_RAW.tar
1.7 Gb
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