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Series GSE130001 Query DataSets for GSE130001
Status Public on Sep 01, 2019
Title Single cell RNA-seq profiling of two bladder cancer specimen
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To explore the heterogeneity of stromal compartment of bladder cancer, we performed scRNAseq on two muscle-invasive bladder cancer specimens
 
Overall design After sorting into CD45-negative and CD45-positive cells, we collected CD45-negative cells for subsequent scRNAseq sequencing.
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Authors state "the raw data (fastq) is deposited to dbGAP".
 
Contributor(s) Sebra RP, Wang L
Citation(s) 32111252
Submission date Apr 17, 2019
Last update date Mar 09, 2020
Contact name Li Wang
E-mail(s) li.wang@mssm.edu
Organization name Icahn school of medicine at Mount Sinai
Street address 1 Gustave L. Levy Pl
City New York
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (2)
GSM3729178 sample1
GSM3729179 sample2
Relations
BioProject PRJNA533470

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130001_RAW.tar 31.8 Mb (http)(custom) TAR (of MTX, TSV)
Raw data not provided for this record
Processed data provided as supplementary file

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