|
| Status |
Public on Dec 08, 2020 |
| Title |
Histone modifications in activated and quiescent mouse muscle stem cells by ChIP-seq |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the application of ChIPmentation on examination of H3K27me3 and H3K4me3 histone marks in freshly isolated satellite cells (QSC) and satellite cells isolated after 2.5 days post-injury (ASC). We observed increase of H3K4me3 marks around transcription start sites (TSS) and decrease of H3K27me3 marks around TSS during satellite cell activation.
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| |
|
| Overall design |
Examination of H3K27me3 and H3K4me3 marks in QSC and ASC.
|
| |
|
| Contributor(s) |
Dong A, So WK, Preusch CB, Cheung TH |
| Citation(s) |
33293420 |
| |
| Submission date |
Apr 12, 2019 |
| Last update date |
Jan 19, 2021 |
| Contact name |
Tom Cheung |
| Organization name |
Hong Kong University of Science and Technology
|
| Department |
Division of Life Science
|
| Street address |
Clear Water Bay, Kowloon
|
| City |
Hong Kong |
| ZIP/Postal code |
N/A |
| Country |
Hong Kong |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (16)
|
|
| This SubSeries is part of SuperSeries: |
| GSE129768 |
A Long Noncoding RNA, LncMyod, Regulates Myogenic Lineage Progression by Modulating Chromatin Accessibility |
|
| Relations |
| BioProject |
PRJNA532634 |
| SRA |
SRP192428 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE129749_yasc_h3k27me3_fold-change_signal.bw |
639.4 Mb |
(ftp)(http) |
BW |
| GSE129749_yasc_h3k27me3_peaks.broadPeak.gz |
2.2 Mb |
(ftp)(http) |
BROADPEAK |
| GSE129749_yasc_h3k27me3_peaks.narrowPeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE129749_yasc_h3k4me3_fold-change_signal.bw |
713.8 Mb |
(ftp)(http) |
BW |
| GSE129749_yasc_h3k4me3_peaks.broadPeak.gz |
734.6 Kb |
(ftp)(http) |
BROADPEAK |
| GSE129749_yasc_h3k4me3_peaks.narrowPeak.gz |
336.1 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE129749_yqsc_h3k27me3_fold-change_signal.bw |
457.9 Mb |
(ftp)(http) |
BW |
| GSE129749_yqsc_h3k27me3_peaks.broadPeak.gz |
2.9 Mb |
(ftp)(http) |
BROADPEAK |
| GSE129749_yqsc_h3k27me3_peaks.narrowPeak.gz |
771.9 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE129749_yqsc_h3k4me3_fold-change_signal.bw |
556.6 Mb |
(ftp)(http) |
BW |
| GSE129749_yqsc_h3k4me3_peaks.broadPeak.gz |
3.7 Mb |
(ftp)(http) |
BROADPEAK |
| GSE129749_yqsc_h3k4me3_peaks.narrowPeak.gz |
286.7 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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