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Series GSE129469 Query DataSets for GSE129469
Status Public on Apr 08, 2021
Title piRNA-30473 contributes to tumorigenesis by regulating RNA m6A-methylation in DLBCL
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary N6-methyladenosine (m6A), the most abundant modification on eukaryote messenger RNA (mRNA), functions in various fundamental bioprocesses. However, the role of m6A in diffuse large B-cell lymphoma (DLBCL) remains poorly understood. Piwi-interacting RNAs (piRNAs), a novel class of small non-coding RNAs, have been documented to be involved in epigenetic regulation of cancer. Here, we reported that piRNA-30473, which expression supported the aggressive phenotype of DLBCL and was correlated with poor prognosis. Moreover, our data indicated that WTAP (m6A mRNA methylase) was downregulated by piRNA-30473 and played a critical oncogenic role in DLBCL. piRNA-30473 or WTAP depletion also reduced proliferation and induced cell cycle arrest, but not apoptosis in DLBCL cells. In “human-in-mouse” xenograft DLBCL models, inhibition of piRNA-30473 led to a significant reduction in tumor volume compared with control. Furthermore, integrating transcriptome and m6A-seq analyses revealed that WTAP through enhancing m6A levels in mRNA transcripts of its critical target gene HK2 and thereby triggering corresponding signaling cascades in DLBCL. Our study highlights the functional importance of m6A modification machinery in DLBCL, and provides profound insights into the molecular mechanism underlying tumorigenesis by revealing a previously unrecognized mechanisms of gene regulation in DLBCL.
 
Overall design m6A-seq in SU-DHL-8 cells with or without WTAP knockdown.
 
Contributor(s) Zhuang W, Li B
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Submission date Apr 08, 2019
Last update date Apr 09, 2021
Contact name Wenzhuo Zhuang
E-mail(s) zhuangwenzhuo@suda.edu.cn
Organization name Soochow University
Department Department of Cell Biology, School of Biology & Basic Medical Sciences
Street address Ren Ai Road 199
City Suzhou
State/province Jiangsu
ZIP/Postal code 215123
Country China
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM3713365 SU-DHL-8 cells_siCtrl input (m6A-Seq)
GSM3713366 SU-DHL-8 cells_siWTAP input (m6A-Seq)
GSM3713367 SU-DHL-8 cells_siCtrl m6A (m6A-Seq)
Relations
BioProject PRJNA531454
SRA SRP191423

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129469_RAW.tar 2.4 Gb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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