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Series GSE129393 Query DataSets for GSE129393
Status Public on Jul 02, 2019
Title Chromatin accessibility maps of muscle infiltrating macrophages.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide chromatin accessibility maps of muscle infiltrating macrophages isolated at day 1 to 4 following acute sterile cardiotoxin injury.
 
Overall design ATAC-seq timecourse from muscle infiltrating macrophage samples after CTX injury.
 
Contributor(s) Patsalos A, Tzerpos P, Halasz L, Nagy G, Giannakis N
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Submission date Apr 05, 2019
Last update date Jul 04, 2019
Contact name Halasz Laszlo
E-mail(s) hlsz.laszlo@gmail.com
Organization name University of Debrecen
Department Department of Biochemistry and Molecular Biology
Street address Egyetem tér 1
City Debrecen
ZIP/Postal code 4032
Country Hungary
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM3712325 Wild-type, replicate 1, Ly6C High macrophages on Day 1 after muscle injury.
GSM3712326 Wild-type, replicate 2, Ly6C High macrophages on Day 1 after muscle injury.
GSM3712327 Wild-type, replicate 2, Ly6C High macrophages on Day 2 after muscle injury.
Relations
BioProject PRJNA531162
SRA SRP191090

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129393_RAW.tar 745.2 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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