|
| Status |
Public on Nov 30, 2019 |
| Title |
Comparative Analysis of TTF-1 Binding DNA Regions in Small Cell Lung Cancer and Non-Small Cell Lung Cancer |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
31782890 |
| Submission date |
Apr 04, 2019 |
| Last update date |
Dec 01, 2019 |
| Contact name |
Daizo Koinuma |
| E-mail(s) |
d-koinuma@umin.ac.jp
|
| Organization name |
University of Tokyo
|
| Department |
Molecular Pathology
|
| Street address |
Hongo 7-3-1, Bunkyo-ku
|
| City |
Tokyo |
| ZIP/Postal code |
113-0033 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
|
| Samples (17)
|
| GSM3711341 |
H209 treated with negative control siRNA (a control for ASCL1 depletion) |
| GSM3711342 |
H209 treated with ASCL1 siRNA #1 |
| GSM3711343 |
H209 treated with ASCL1 siRNA #2 |
| GSM3711344 |
H209 treated with negative control siRNA (a control for TTF-1 depletion) |
| GSM3711345 |
H209 treated with TTF-1 siRNA #1 |
| GSM3711346 |
H209 treated with TTF-1 siRNA #2 |
| GSM3711347 |
H441 treated with negative control siRNA |
| GSM3711348 |
H441 treated with TTF-1 siRNA #1 |
| GSM3711349 |
H441 treated with TTF-1 siRNA #2 |
| GSM4147960 |
TTF-1 binding region in NCI-H209, replicate 2 |
| GSM4147961 |
ASCL1 binding region in NCI-H209, replicate 2 |
| GSM4147962 |
Input genomic DNA, NCI-H209, replicate 2 |
| GSM4147963 |
TTF-1 binding region in NCI-H441, replicate 2 |
| GSM4147964 |
Input genomic DNA, NCI-H441, replicate 2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE129312 |
TTF-1/NKX2-1 and ASCL1 binding regions in a small cell lung carcinoma cell line, NCI-H209 |
| GSE129340 |
RNA-seq transcriptome analysis in NCI-H209 and NCI-H441 cells transfected with TTF-1/NKX2-1 or ASCL1 siRNAs. |
| GSE139868 |
TTF-1/NKX2-1 and ASCL1 binding regions in NCI-H209 and NKX2-1 binding regions in NCI-H441, replicate 2 |
|
| Relations |
| BioProject |
PRJNA530969 |
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