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Series GSE128365 Query DataSets for GSE128365
Status Public on Mar 05, 2020
Title Sequencing of metabolically labeled transcripts in single cells from RPE1-FUCCI cells and murine intestinal organoids.
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Measurements of metabolically labeled transcripts in single cells for estimation of mRNA synthesis and degradation rates throughout the cell cycle and intestinal organoid differentiation.
 
Overall design Sequencing of metabolically labeled transcripts in single cells from RPE1-FUCCI cells (cell cycle), K562 cells (heat shock), and murine intestinal organoids (differentiation).
 
Contributor(s) Battich N, Beumer J, de Barbanson B, Krenning L, Baron CS, Tanenbaum ME, Clevers H, van Oudenaarden A
Citation(s) 38886577
Submission date Mar 15, 2019
Last update date Aug 08, 2024
Contact name Nico Battich
E-mail(s) nico.battich@googlemail.com
Organization name Hubrecht Institute
Street address Uppsalalaan 8
City Utrecht
State/province Utrecht
ZIP/Postal code 3584 CT
Country Netherlands
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (80)
GSM3672479 RPE1-Chase-plate01-labeled
GSM3672480 RPE1-Chase-plate01-unlabeled
GSM3672481 RPE1-Chase-plate03-labeled
Relations
BioProject PRJNA527268
SRA SRP188539

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128365_RAW.tar 18.8 Mb (http)(custom) TAR (of CSV)
GSE128365_SupplementaryData_CellBarcodesAndPlateLayouts.xlsx 24.6 Kb (ftp)(http) XLSX
GSE128365_SupplementaryData_RPE1_CelSeq2.csv.gz 9.4 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_RPE1_labeled_splicedUMI.csv.gz 7.9 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_RPE1_labeled_unsplicedUMI.csv.gz 4.0 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_RPE1_metadata.csv.gz 94.5 Kb (ftp)(http) CSV
GSE128365_SupplementaryData_RPE1_unlabeled_splicedUMI.csv.gz 15.7 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_RPE1_unlabeled_unsplicedUMI.csv.gz 6.0 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_organoids_cell_metadata.csv.gz 104.9 Kb (ftp)(http) CSV
GSE128365_SupplementaryData_organoids_labeled_splicedUMI.csv.gz 3.2 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_organoids_labeled_unsplicedUMI.csv.gz 2.1 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_organoids_unlabeled_splicedUMI.csv.gz 4.9 Mb (ftp)(http) CSV
GSE128365_SupplementaryData_organoids_unlabeled_unsplicedUMI.csv.gz 2.9 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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