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Series GSE128175 Query DataSets for GSE128175
Status Public on May 12, 2020
Title Single-cell RNA-Seq analysis of WT and Bach2-deficient Foxp3+ Treg cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary These are the FastQ files used for scRNA-Seq analysis of WT and Bach2-deficient splenic Foxp3+ Treg cells
Overall design RNA-seq profile from single EGFP+ Treg cells isolated from the spleens of tamoxifen-treated Bach2+/+ Foxp3EGFP-Cre-ERT2 (WT) mice and Bach2fl/fl Foxp3EGFP-Cre-ERT2 (CKO) mice , were generated by deep sequencing using Illumina HiSeq4000
Contributor(s) Sadiyah M
Citation(s) 32515782
Submission date Mar 12, 2019
Last update date Aug 17, 2020
Contact name Mohammed-Firas Sadiyah
Organization name University of Cambridge
Street address The Old Schools, Trinity Ln
City Cambridge
ZIP/Postal code CB2 1TN
Country United Kingdom
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (6)
GSM3679901 Foxp3-GFP+Treg_cKO_Rep1_scRNA-seq
GSM3679902 Foxp3-GFP+Treg_cKO_Rep2_scRNA-seq
GSM3679903 Foxp3-GFP+Treg_cKO_Rep3_scRNA-seq
This SubSeries is part of SuperSeries:
GSE128176 BACH2 is repurposed following Treg lineage commitment to drive the functional quiescence and maintenance of resting Treg cells
BioProject PRJNA527355
SRA SRP188560

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128175_Genes_exhibiting_enrichment_in_at_least_one_cluster_seurat_find_cluster.xlsx 111.6 Kb (ftp)(http) XLSX
GSE128175_data.csv.gz 81.9 Mb (ftp)(http) CSV
GSE128175_rawdata.csv.gz 11.7 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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