GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE128017
Query DataSets for GSE128017
Status
Public on May 15, 2019
Title
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
Organism
Mus musculus
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31133702
Submission date
Mar 07, 2019
Last update date
Jun 01, 2024
Contact name
Luca Giorgetti
Organization name
Friedrich Miescher Institute for Biomedical Research
Street address
Fabrikstrasse 24
City
Basel
ZIP/Postal code
4056
Country
Switzerland
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (91)
Less...
More...
GSM3660377
2.7kb mixed_population nodox 10nM repl1
GSM3660378
2.7kb mixed_population dox 10nM repl1
GSM3660379
2.7kb mixed_population dox 25nM repl1
GSM3660380
2.7kb mixed_population nodox 25nM repl1
GSM3660381
2.7kb mixed_population dox 50nM repl1
GSM3660382
2.7kb mixed_population nodox 50nM repl1
GSM3660383
2.7kb mixed_population dox 100nM repl1
GSM3660384
2.7kb mixed_population nodox 100nM repl1
GSM3660385
2.7kb mixed_population dox 500nM repl1
GSM3660386
2.7kb mixed_population nodox 500nM repl1
GSM3660387
2.7kb mixed_population dox 0.1nM repl1
GSM3660388
2.7kb mixed_population nodox 0.1nM repl1
GSM3660389
2.7kb mixed_population dox 0.5nM repl1
GSM3660390
2.7kb mixed_population nodox 0.5nM repl1
GSM3660391
2.7kb mixed_population dox 1nM repl1
GSM3660392
2.7kb mixed_population nodox 1nM repl1
GSM3660393
2.7kb mixed_population dox 5nM repl1
GSM3660394
2.7kb mixed_population nodox 5nM repl1
GSM3660395
0.1 nM_CTCF_clone_-dox_rp1
GSM3660396
0.1 nM_CTCF_clone_+dox_rp1
GSM3660397
0.1 nM_CTCF_clone_-dox_rp2
GSM3660398
0.1 nM_CTCF_clone_+dox_rp2
GSM3660399
1 nM_CTCF_clone_-dox_rp1
GSM3660400
1 nM_CTCF_clone_+dox_rp1
GSM3660401
1 nM_CTCF_clone_-dox_rp2
GSM3660402
1 nM_CTCF_clone_+dox_rp2
GSM3660403
0.1 nM_CTCF_clone_cre_deleted_-dox_rp1
GSM3660404
0.1 nM_CTCF_clone_cre_deleted_+dox_rp1
GSM3660405
0.1 nM_CTCF_clone_cre_deleted_-dox_rp2
GSM3660406
0.1 nM_CTCF_clone_cre_deleted_+dox_rp2
GSM3660407
1 nM_CTCF_clone_cre_deleted_-dox_rp1
GSM3660408
1 nM_CTCF_clone_cre_deleted_+dox_rp1
GSM3660409
1 nM_CTCF_clone_cre_deleted_-dox_rp2
GSM3660410
1 nM_CTCF_clone_cre_deleted_+dox_rp2
GSM3660411
0.1 nM_2.7kb_pure_clone_-dox_rp1
GSM3660412
0.1 nM_2.7kb_pure_clone_+dox_rp1
GSM3660413
1 nM_2.7kb_pure_clone_-dox_rp1
GSM3660414
1 nM_2.7kb_pure_clone_+dox_rp1
GSM3660415
0.1 nM_2.7kb_pure_clone_-dox_rp2
GSM3660416
0.1 nM_2.7kb_pure_clone_+dox_rp2
GSM3660417
1 nM_2.7kb_pure_clone_-dox_rp2
GSM3660418
1 nM_2.7kb_pure_clone_+dox_rp2
GSM3660419
0.1 nM_2.7kb_pure_clone_-dox_rp3
GSM3660420
0.1 nM_2.7kb_pure_clone_+dox_rp3
GSM3660421
1 nM_2.7kb_pure_clone_-dox_rp3
GSM3660422
1 nM_2.7kb_pure_clone_+dox_rp3
GSM3660423
5 nM_2.7kb_pure_clone_-dox_rp1
GSM3660424
5 nM_2.7kb_pure_clone_+dox_rp1
GSM3660425
10 nM_2.7kb_pure_clone_-dox_rp1
GSM3660426
10 nM_2.7kb_pure_clone_+dox_rp1
GSM3660427
25 nM_2.7kb_pure_clone_-dox_rp1
GSM3660428
25 nM_2.7kb_pure_clone_+dox_rp1
GSM3660429
50 nM_2.7kb_pure_clone_-dox_rp1
GSM3660430
50 nM_2.7kb_pure_clone_+dox_rp1
GSM3660431
100 nM_2.7kb_pure_clone_-dox_rp1
GSM3660432
100 nM_2.7kb_pure_clone_+dox_rp1
GSM3660433
500 nM_2.7kb_pure_clone_-dox_rp1
GSM3660434
500 nM_2.7kb_pure_clone_+dox_rp1
GSM3660435
0.1 nM_2.7kb_pure_clone_-dox_rp4
GSM3660436
0.1 nM_2.7kb_pure_clone_+dox_rp4
GSM3660437
1 nM_2.7kb_pure_clone_-dox_rp4
GSM3660438
1 nM_2.7kb_pure_clone_+dox_rp4
GSM3660439
5 nM_2.7kb_pure_clone_-dox_rp2
GSM3660440
5 nM_2.7kb_pure_clone_+dox_rp2
GSM3660441
10 nM_2.7kb_pure_clone_-dox_rp2
GSM3660442
10 nM_2.7kb_pure_clone_+dox_rp2
GSM3660443
25 nM_2.7kb_pure_clone_-dox_rp2
GSM3660444
25 nM_2.7kb_pure_clone_+dox_rp2
GSM3660445
50 nM_2.7kb_pure_clone_-dox_rp2
GSM3660446
50 nM_2.7kb_pure_clone_+dox_rp2
GSM3660447
100 nM_2.7kb_pure_clone_-dox_rp2
GSM3660448
100 nM_2.7kb_pure_clone_+dox_rp2
GSM3660449
500 nM_2.7kb_pure_clone_-dox_rp2
GSM3660450
500 nM_2.7kb_pure_clone_+dox_rp2
GSM3660451
4C_2.7kb_clone_replicate1
GSM3660452
4C_2.7kb_clone_replicate2
GSM3660453
4C_3CTCF_clone_replicate1
GSM3660454
4C_3CTCF_clone_replicate2
GSM3660455
4C_noteto_WT_chr1_CTCF
GSM3660456
4C_noteto_WT_chr1_reverseCTCF
GSM3660457
4C_27kb_chr1_CTCF_repl1
GSM3660458
4C_27kb_chr1_reverseCTCF_repl1
GSM3660459
4C_27kb_chr1_CTCF_repl2
GSM3660460
4C_27kb_chr1_reverseCTCF_repl2
GSM3660461
HiC_2.7kb_clone_replicate1
GSM3660462
HiC_2.7kb_clone_replicate2
GSM3660463
HiC_3CTCF_clone_replicate1
GSM3660464
HiC_3CTCF_clone_replicate2
GSM3660465
Capture_2.7kb_teto_integrations_mixed_population
GSM3660466
Capture_3CTCF_teto_integrations_clone
GSM3660467
Capture_2.7kb_teto_integrations_pure_clone
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE128013
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation [damC]
GSE128014
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation [4C]
GSE128015
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation [HiC]
GSE128016
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation [capture-mapping]
Relations
BioProject
PRJNA526050
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE128017_RAW.tar
4.6 Gb
(http)
(custom)
TAR (of MATRIX, TXT, XLSX)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|