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Series GSE127807 Query DataSets for GSE127807
Status Public on Aug 14, 2019
Title DC3: Deconvolution and coupled clustering from bulk and single cell genomics data
Organism Mus musculus
Experiment type Other
Summary HiChIP data generated for the retinoic acid-induced mESC differentiation at day 4.
 
Overall design We introduce DC3 (for De-Convolution and Coupled-Clustering) as a method for the joint analysis of bulk HiChIP, scRNA-seq and scATAC-seq data from the same heterogeneous cell population.
 
Contributor(s) Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong W
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 04, 2019
Last update date Aug 17, 2019
Contact name Zhana Duren
E-mail(s) durenzn@amss.ac.cn
Organization name Stanford university
Street address 318 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 90304
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (17)
GSM3639217 RAd4_bulk_1
GSM3639218 RAd4_bulk_2
GSM3639219 RAd4_bulk_3
Relations
BioProject PRJNA525433
SRA SRP187462

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127807_RAW.tar 16.0 Mb (http)(custom) TAR (of BEDPE)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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