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Status |
Public on Aug 14, 2019 |
Title |
DC3: Deconvolution and coupled clustering from bulk and single cell genomics data |
Organism |
Mus musculus |
Experiment type |
Other
|
Summary |
HiChIP data generated for the retinoic acid-induced mESC differentiation at day 4.
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Overall design |
We introduce DC3 (for De-Convolution and Coupled-Clustering) as a method for the joint analysis of bulk HiChIP, scRNA-seq and scATAC-seq data from the same heterogeneous cell population.
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Contributor(s) |
Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong W |
Citation(s) |
31601804 |
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Submission date |
Mar 04, 2019 |
Last update date |
Oct 21, 2019 |
Contact name |
Zhana Duren |
E-mail(s) |
durenzn@amss.ac.cn
|
Organization name |
Stanford university
|
Street address |
318 Campus Drive
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
90304 |
Country |
USA |
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Platforms (1) |
GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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Samples (17)
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Relations |
BioProject |
PRJNA525433 |
SRA |
SRP187462 |