|
| Status |
Public on Aug 14, 2019 |
| Title |
DC3: Deconvolution and coupled clustering from bulk and single cell genomics data |
| Organism |
Mus musculus |
| Experiment type |
Other
|
| Summary |
HiChIP data generated for the retinoic acid-induced mESC differentiation at day 4.
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| |
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| Overall design |
We introduce DC3 (for De-Convolution and Coupled-Clustering) as a method for the joint analysis of bulk HiChIP, scRNA-seq and scATAC-seq data from the same heterogeneous cell population.
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| |
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| Contributor(s) |
Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong W |
| Citation(s) |
31601804 |
| |
| Submission date |
Mar 04, 2019 |
| Last update date |
Oct 21, 2019 |
| Contact name |
Zhana Duren |
| E-mail(s) |
durenzn@amss.ac.cn
|
| Organization name |
Stanford university
|
| Street address |
318 Campus Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
90304 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (17)
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| Relations |
| BioProject |
PRJNA525433 |
| SRA |
SRP187462 |
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